Merge remote-tracking branch 'upstream/master' into testCases

Author: wilfonba

.github/file-filter.yml

@@ -22,12 +22,16 @@ scripts: &scripts
   - 'toolchain/bootstrap/**'
 
 yml: &yml
-  - '**/*.yml'
+  - '.github/workflows/phoenix/**'
+  - '.github/workflows/frontier/**'
+  - '.github/workflows/bench.yml'
+  - '.github/workflows/test.yml'
+  - '.github/workflows/formatting.yml'
 
 checkall: &checkall
   - *fortran_src
   - *python_src
   - *cmakelist
   - *tests
   - *scripts
-  - *yml
+  - *yml

.github/workflows/bench.yml

@@ -20,7 +20,8 @@ jobs:
 
   self:
     name: Georgia Tech | Phoenix (NVHPC)
-    if: github.repository == 'MFlowCode/MFC'
+    if: github.repository == 'MFlowCode/MFC' && needs.file-changes.outputs.checkall == 'true'
+    needs: file-changes
     strategy:
       matrix:
         device: ['cpu', 'gpu']

.github/workflows/docs.yml

@@ -1,16 +1,17 @@
 name: Documentation
 
-on: [push, pull_request, workflow_dispatch]
+on:
+  schedule:
+    - cron: '0 0 * * *'  # This runs every day at midnight UTC
+  workflow_dispatch:
+  push:
+  pull_request:
 
 jobs:
   docs:
     name:    Build & Publish
     runs-on: ubuntu-latest
 
-    concurrency:
-      group: docs-publish
-      cancel-in-progress: true
-
     steps:
     - uses: actions/checkout@v4
 
@@ -46,8 +47,14 @@ jobs:
         echo "url-count = ${{ steps.sitemap.outputs.url-count }}"
         echo "excluded-count = ${{ steps.sitemap.outputs.excluded-count }}"
 
+    - name: Linkcheck - Lychee
+      uses: lycheeverse/lychee-action@v2
+      with:
+        args: -c .lychee.toml build/install/docs/mfc/
+        fail: false
+
     - name: Publish Documentation
-      if:   github.repository == 'MFlowCode/MFC' && github.ref == 'refs/heads/master' && github.event_name == 'push'
+      if:   github.repository == 'MFlowCode/MFC' && github.ref == 'refs/heads/master' &&  (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' )
       run:  |
         set +e
         git ls-remote "${{ secrets.DOC_PUSH_URL }}" -q

.github/workflows/line-count.yml

@@ -1,4 +1,4 @@
-name: Check Line Counts
+name: Lines of Code
 
 on: [push, pull_request, workflow_dispatch]
 

.github/workflows/links.yml

@@ -0,0 +1,32 @@
+name: Lint Source
+
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  file-changes:
+    name: Detect File Changes
+    runs-on: 'ubuntu-latest'
+    outputs: 
+      checkall: ${{ steps.changes.outputs.checkall }}
+    steps:
+      - name: Clone
+        uses: actions/checkout@v4
+
+      - name: Detect Changes
+        uses: dorny/paths-filter@v3
+        id: changes
+        with: 
+          filters: ".github/file-filter.yml"
+
+  lint-source:
+    name: Lint Source
+    runs-on: 'ubuntu-latest'
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Install Fortitude
+      run: pip install fortitude-lint ansi2txt
+
+    - name: Lint the source code
+      run:  fortitude check --ignore=E001,S001,S101,M011,F001,S041,T001 ./src/*/* || true

.github/workflows/lint-source.yml

@@ -1,9 +1,9 @@
-name: Lint
+name: Lint Toolchain
 
 on: [push, pull_request, workflow_dispatch]
 
 jobs:
-  docs:
+  lint-toolchain:
     name:    Lint Toolchain
     runs-on: ubuntu-latest
 

.github/workflows/lint.yml renamed to .github/workflows/lint-toolchain.yml

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-n_ranks=4
+n_ranks=12
 
 if [ "$job_device" == "gpu" ]; then
     n_ranks=$(nvidia-smi -L | wc -l)        # number of GPUs on node
@@ -9,7 +9,7 @@ if [ "$job_device" == "gpu" ]; then
 fi
 
 if ["$job_device" == "gpu"]; then
-    ./mfc.sh bench --mem 8 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
+    ./mfc.sh bench --mem 12 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
 else
     ./mfc.sh bench --mem 1 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
-fi
+fi

.github/workflows/phoenix/bench.sh

@@ -41,7 +41,7 @@ sbatch <<EOT
 #SBATCH --account=gts-sbryngelson3 # charge account
 #SBATCH -N1                        # Number of nodes required
 $sbatch_device_opts
-#SBATCH -t 04:00:00                # Duration of the job (Ex: 15 mins)
+#SBATCH -t 02:00:00                # Duration of the job (Ex: 15 mins)
 #SBATCH -q embers                  # QOS Name
 #SBATCH -o$job_slug.out            # Combined output and error messages file
 #SBATCH -W                         # Do not exit until the submitted job terminates.