Merge branch 'MFlowCode:master' into master

Author: haochey

.github/workflows/bench.yml

@@ -3,6 +3,21 @@ name: 'Benchmark'
 on: pull_request
 
 jobs:
+  file-changes:
+    name: Detect File Changes
+    runs-on: 'ubuntu-latest'
+    outputs: 
+      checkall: ${{ steps.changes.outputs.checkall }}
+    steps:
+      - name: Clone
+        uses: actions/checkout@v4
+
+      - name: Detect Changes
+        uses: dorny/paths-filter@v3
+        id: changes
+        with: 
+          filters: ".github/file-filter.yml"
+
   self:
     name: Georgia Tech | Phoenix (NVHPC)
     if: github.repository == 'MFlowCode/MFC'
@@ -12,6 +27,9 @@ jobs:
     runs-on:
       group:  phoenix
       labels: gt
+    env:
+      ACTIONS_RUNNER_FORCE_ACTIONS_NODE_VERSION: node16
+      ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true
     steps:
       - name: Clone - PR
         uses: actions/checkout@v3

.github/workflows/coverage.yml

@@ -42,4 +42,10 @@ jobs:
       - name: Upload coverage reports to Codecov
         uses: codecov/[email protected]
         with:
-          token: ${{ secrets.CODECOV_TOKEN }}
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: true
+          verbose: true
+          version: v0.6.0
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+

.github/workflows/test.yml

@@ -1,20 +1,6 @@
 name: 'Test Suite'
 
-on:
-  push:
-    paths:
-      - '**.f90'
-      - '**.fpp'
-      - '**.py'
-      - '**.yml'
-      - 'mfc.sh'
-      - 'golden.txt'
-      - 'CMakeLists.txt'
-      - 'requirements.txt'
-
-  pull_request:
-
-  workflow_dispatch:
+on: [push, pull_request, workflow_dispatch]
 
 jobs:
   file-changes:
@@ -140,6 +126,9 @@ jobs:
     runs-on:
       group:  phoenix
       labels: ${{ matrix.lbl }}
+    env:
+      ACTIONS_RUNNER_FORCE_ACTIONS_NODE_VERSION: node16
+      ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true
     steps:
       - name: Clone
         uses: actions/checkout@v3

.typos.toml

@@ -13,6 +13,10 @@ nd = "nd"
 iy = "iy"
 HPE = "HPE"
 alph = "alph"
+gam = "gam"
+Gam = "Gam"
+strang = "strang"
+Strang = "Strang"
 
 [files]
 extend-exclude = ["docs/documentation/references*", "tests/", "toolchain/cce_simulation_workgroup_256.sh"]

benchmarks/viscous_weno5_sgb_mono/case.py

@@ -28,7 +28,7 @@
 procs  = DICT["nodes"] * DICT["tasks_per_node"]
 ncells = math.floor(ppg * procs * ARGS["gbpp"])
 s      = math.floor((ncells / 2.0) ** (1/3))
-Nx, Ny, Nz = 2*s, s, s
+Nx, Ny, Nz = s, s, 2*s
 
 x0      = 10.E-04
 y0      = 10.E-04
@@ -86,8 +86,8 @@
 cfl     = 0.01
 Ldomain = 20.E-03
 L       = Ldomain/x0
-dx      = L/float(Nx)
-dt      = cfl*dx*c0/cact
+dz      = L/float(Nz)
+dt      = cfl*dz*c0/cact
 Lpulse  = 0.3*Ldomain
 Tpulse  = Lpulse/cact
 
@@ -98,12 +98,12 @@
     # ==========================================================
 
     # Computational Domain Parameters ==========================
-    'x_domain%beg'                 : -10.E-03/x0,
-    'x_domain%end'                 :  10.E-03/x0,
+    'x_domain%beg'                 : -5.E-03/x0,
+    'x_domain%end'                 :  5.E-03/x0,
     'y_domain%beg'                 : -5.E-03/y0,
-    'y_domain%end'                 : 5.E-03/y0,
-    'z_domain%beg'                 : -5.E-03/z0,
-    'z_domain%end'                 : 5.E-03/z0,
+    'y_domain%end'                 :  5.E-03/y0,
+    'z_domain%beg'                 : -10.E-03/z0,
+    'z_domain%end'                 :  10.E-03/z0,
     'stretch_x'                    : 'F',
     'cyl_coord'                    : 'F',
     'm'                            : Nx,
@@ -154,9 +154,9 @@
     'patch_icpp(1)%x_centroid'     : 0.,
     'patch_icpp(1)%y_centroid'     : 0.,
     'patch_icpp(1)%z_centroid'     : 0.,
-    'patch_icpp(1)%length_x'       : 20.E-03/x0,
+    'patch_icpp(1)%length_x'       : 10.E-03/x0,
     'patch_icpp(1)%length_y'       : 10.E-03/y0,
-    'patch_icpp(1)%length_z'       : 10.E-03/z0,
+    'patch_icpp(1)%length_z'       : 20.E-03/z0,
     'patch_icpp(1)%vel(1)'         : 0.0,
     'patch_icpp(1)%vel(2)'         : 0.0,
     'patch_icpp(1)%vel(3)'         : 0.0,
@@ -172,9 +172,9 @@
     'patch_icpp(2)%x_centroid'     : 0.,
     'patch_icpp(2)%y_centroid'     : 0.,
     'patch_icpp(2)%z_centroid'     : 0.,
-    'patch_icpp(2)%length_x'       : 5.E-03/x0,
+    'patch_icpp(2)%length_x'       : 10.E-03/x0,
     'patch_icpp(2)%length_y'       : 10.E-03/y0,
-    'patch_icpp(2)%length_z'       : 10.E-03/z0,
+    'patch_icpp(2)%length_z'       : 5.E-03/z0,
     'patch_icpp(2)%alter_patch(1)' : 'T',
     'patch_icpp(2)%vel(1)'         : 0.0,
     'patch_icpp(2)%vel(2)'         : 0.0,
@@ -230,7 +230,8 @@
     # Acoustic source ==========================================
     'Monopole'                     : 'T',
     'num_mono'                     : 1,
-    'Mono(1)%loc(1)'               : -5.E-03/x0,
+    'Mono(1)%support'              : 4,
+    'Mono(1)%loc(3)'               : -5.E-03/x0,
     'Mono(1)%npulse'               : 1,
     'Mono(1)%dir'                  : 1.,
     'Mono(1)%pulse'                : 1,