fix links (#956)

Author: sbryngelson

docs/documentation/case.md

@@ -1,7 +1,6 @@
 # Case Files
 
-Example Python case files, also referred to as *input files*, can be found in the [examples/](https://github.com/MFlowCode/MFC/tree/master/examples) directory. They print a Python dictionary containing input parameters for MFC. Their contents, and a guide to filling them out, are documented
-in the user manual. A commented, tutorial script
+Example Python case files, also referred to as *input files*, can be found in the [examples/](https://github.com/MFlowCode/MFC/tree/master/examples) directory. They print a Python dictionary containing input parameters for MFC. Their contents, and a guide to filling them out, are documented in the user manual. A commented, tutorial script
 can also be found in [examples/3d_sphbubcollapse/](https://github.com/MFlowCode/MFC/blob/master/examples/3D_sphbubcollapse/case.py).
 
 ## Basic Skeleton

docs/documentation/getting-started.md

@@ -23,7 +23,7 @@ Please select your desired configuration from the list bellow:
 . ./mfc.sh load
 ```
 
-- **Via [Aptitude](https://wiki.debian.org/Aptitude):**
+- **Via Aptitude:**
 
 ```shell
 sudo apt update

examples/2D_lid_driven_cavity/README.md

@@ -6,8 +6,6 @@ Reference:
 > Ghia, U., & Ghia, K. N., & Shin, C. T. (1982). High-re solutions for incompressible flow
 using the Navier-Stokes equations and a multigrid method. Journal of Computational Physics, 48, 387-411
 
-Video: https://youtube.com/shorts/JEP28scZrBM?feature=share
-
 ## Final Condition
 
 <img src="final_condition.png" height="MAX_HEIGHT"/>

examples/nD_perfect_reactor/README.md

@@ -1,7 +1,7 @@
 # Perfectly Stirred Reactor
 
 Reference:
-> G. B. Skinner and G. H. Ringrose, “Ignition Delays of a Hydrogen—Oxygen—Argon Mixture at Relatively Low Temperatures”, J. Chem. Phys., vol. 42, no. 6, pp. 2190–2192, Mar. 1965. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1063/1.1696266.
+> G. B. Skinner and G. H. Ringrose, “Ignition Delays of a Hydrogen—Oxygen—Argon Mixture at Relatively Low Temperatures”, J. Chem. Phys., vol. 42, no. 6, pp. 2190–2192, Mar. 1965. Accessed: Oct. 13, 2024.
 
 ```bash
 $ python3 analyze.py

examples/scaling/README.md

@@ -1,6 +1,6 @@
 # Strong- & Weak-scaling
 
-The [**Scaling**](case.py) case can exercise both weak- and strong-scaling. It
+The scaling case can exercise both weak- and strong-scaling. It
 adjusts itself depending on the number of requested ranks.
 
 This directory also contains a collection of scripts used to test strong-scaling