Merge remote-tracking branch 'origin' into exampleCI2

Author: okBrian

.github/codecov.yml

@@ -4,3 +4,7 @@ coverage:
       default:
         target: 1%
         threshold: 1%
+    patch:
+      default:
+        target: 1%
+        threshold: 1%

.github/file-filter.yml

@@ -22,12 +22,16 @@ scripts: &scripts
   - 'toolchain/bootstrap/**'
 
 yml: &yml
-  - '**/*.yml'
+  - '.github/workflows/phoenix/**'
+  - '.github/workflows/frontier/**'
+  - '.github/workflows/bench.yml'
+  - '.github/workflows/test.yml'
+  - '.github/workflows/formatting.yml'
 
 checkall: &checkall
   - *fortran_src
   - *python_src
   - *cmakelist
   - *tests
   - *scripts
-  - *yml
+  - *yml

.github/workflows/bench.yml

@@ -20,7 +20,8 @@ jobs:
 
   self:
     name: Georgia Tech | Phoenix (NVHPC)
-    if: github.repository == 'MFlowCode/MFC'
+    if: github.repository == 'MFlowCode/MFC' && needs.file-changes.outputs.checkall == 'true'
+    needs: file-changes
     strategy:
       matrix:
         device: ['cpu', 'gpu']

.github/workflows/docs.yml

@@ -1,16 +1,17 @@
 name: Documentation
 
-on: [push, pull_request, workflow_dispatch]
+on:
+  schedule:
+    - cron: '0 0 * * *'  # This runs every day at midnight UTC
+  workflow_dispatch:
+  push:
+  pull_request:
 
 jobs:
   docs:
     name:    Build & Publish
     runs-on: ubuntu-latest
 
-    concurrency:
-      group: docs-publish
-      cancel-in-progress: true
-
     steps:
     - uses: actions/checkout@v4
 
@@ -47,7 +48,7 @@ jobs:
         echo "excluded-count = ${{ steps.sitemap.outputs.excluded-count }}"
 
     - name: Publish Documentation
-      if:   github.repository == 'MFlowCode/MFC' && github.ref == 'refs/heads/master' && github.event_name == 'push'
+      if:   github.repository == 'MFlowCode/MFC' && github.ref == 'refs/heads/master' && ( github.event_name == 'cron' || github.event_name == 'workflow_dispatch' )
       run:  |
         set +e
         git ls-remote "${{ secrets.DOC_PUSH_URL }}" -q

.github/workflows/phoenix/bench.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-n_ranks=4
+n_ranks=12
 
 if [ "$job_device" == "gpu" ]; then
     n_ranks=$(nvidia-smi -L | wc -l)        # number of GPUs on node
@@ -9,7 +9,7 @@ if [ "$job_device" == "gpu" ]; then
 fi
 
 if ["$job_device" == "gpu"]; then
-    ./mfc.sh bench --mem 8 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
+    ./mfc.sh bench --mem 12 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
 else
     ./mfc.sh bench --mem 1 -j $(nproc) -o "$job_slug.yaml" -- -c phoenix $device_opts -n $n_ranks
-fi
+fi

.github/workflows/phoenix/submit.sh

@@ -41,7 +41,7 @@ sbatch <<EOT
 #SBATCH --account=gts-sbryngelson3 # charge account
 #SBATCH -N1                        # Number of nodes required
 $sbatch_device_opts
-#SBATCH -t 04:00:00                # Duration of the job (Ex: 15 mins)
+#SBATCH -t 02:00:00                # Duration of the job (Ex: 15 mins)
 #SBATCH -q embers                  # QOS Name
 #SBATCH -o$job_slug.out            # Combined output and error messages file
 #SBATCH -W                         # Do not exit until the submitted job terminates.

benchmarks/5eq_rk3_weno3_hllc/case.py

@@ -194,8 +194,8 @@
     'cyl_coord'                    : 'F',
     'dt'                           : dt,
     't_step_start'                 : 0,
-    't_step_stop'                  : int(60*(95*size + 5)),
-    't_step_save'                  : int(60*(95*size + 5)),
+    't_step_stop'                  : int(30*(95*size + 5)),
+    't_step_save'                  : int(30*(95*size + 5)),
     # ==========================================================
 
     # Simulation Algorithm Parameters ==========================

benchmarks/hypo_hll/case.py

@@ -47,8 +47,8 @@
                     'p'                            : Nz,
                     'dt'                           : 1e-8,
                     't_step_start'                 : 0,
-                    't_step_stop'                  : int(60*(95*size + 5)),
-                    't_step_save'                  : int(60*(95*size + 5)),
+                    't_step_stop'                  : int(30*(95*size + 5)),
+                    't_step_save'                  : int(30*(95*size + 5)),
 		    # ==========================================================
 
                     # Simulation Algorithm Parameters ==========================

benchmarks/ibm/case.py

@@ -51,8 +51,8 @@
             'p'                            : Nz,                         
             'dt'                           : mydt,                      
             't_step_start'                 : 0,                         
-            't_step_stop'                  : int(40*(95*size + 5)),
-            't_step_save'                  : int(40*(95*size + 5)),
+            't_step_stop'                  : int(20*(95*size + 5)),
+            't_step_save'                  : int(20*(95*size + 5)),
 		    # ==========================================================
 
             # Simulation Algorithm Parameters ==========================

benchmarks/viscous_weno5_sgb_acoustic/case.py

@@ -113,8 +113,8 @@
     'p'                            : Nz,
     'dt'                           : dt,
     't_step_start'                 : 0,
-    't_step_stop'                  : int(30*(25*size + 5)),
-    't_step_save'                  : int(30*(25*size + 5)),
+    't_step_stop'                  : int(15*(25*size + 5)),
+    't_step_save'                  : int(15*(25*size + 5)),
     # ==========================================================
 
     # Simulation Algorithm Parameters ==========================