update profiling

Author: wilfonba

\

@@ -0,0 +1,72 @@
+#!/usr/bin/env bash
+
+<%namespace name="helpers" file="helpers.mako"/>
+
+% if engine == 'batch':
+#SBATCH --nodes=${nodes}
+#SBATCH --ntasks-per-node=${tasks_per_node}
+#SBATCH --job-name="${name}"
+#SBATCH --output="${name}.out"
+#SBATCH --time=${walltime}
+#SBATCH --cpus-per-task=7
+% if gpu:
+#SBATCH --gpus-per-task=1
+#SBATCH --gpu-bind=closest
+% endif
+% if account:
+#SBATCH --account=${account}
+% endif
+% if partition:
+#SBATCH --partition=${partition}
+% endif
+% if quality_of_service:
+#SBATCH --qos=${quality_of_service}
+% endif
+% if email:
+#SBATCH --mail-user=${email}
+#SBATCH --mail-type="BEGIN, END, FAIL"
+% endif
+% endif
+
+${helpers.template_prologue()}
+
+ok ":) Loading modules:\n"
+cd "${MFC_ROOT_DIR}"
+% if engine == 'batch':
+. ./mfc.sh load -c f -m ${'g' if gpu else 'c'}
+% endif
+cd - > /dev/null
+echo
+
+export MPICH_GPU_SUPPORT_ENABLED=1
+
+% for target in targets:
+    ${helpers.run_prologue(target)}
+
+    % if not mpi:
+        (set -x; \
+        % target == 'simulation':
+            ${profiler} \
+        % endif
+            "${target.get_install_binpath(case)}")
+    % else:
+        (set -x; srun \
+        % if engine == 'interactive':
+                --nodes ${nodes} --ntasks-per-node ${tasks_per_node} \
+                --cpus-per-task 7                                    \
+            % if gpu:
+                --gpus-per-task 1 --gpu-bind closest                 \
+            % endif
+        % endif
+        % if target == 'simulation':
+                ${profiler} \
+        % endif
+                "${target.get_install_binpath(case)}")
+    % endif
+
+    ${helpers.run_epilogue(target)}
+
+    echo
+% endfor
+
+${helpers.template_epilogue()}