update readme

Author: sbryngelson

README.md

@@ -5,10 +5,8 @@ for multi-component, multi-phase, and bubbly flows.
 
 # Authors
 
-  MFC was developed at Caltech by a group
-  of post-doctoral scientists and graduate research students
-  under the supervision of Professor Tim Colonius. These contributors 
-  include:
+  MFC was developed at Caltech by a group of post-doctoral scientists and graduate research students under the supervision of Professor Tim Colonius.
+  These contributors include:
 * Dr. Spencer Bryngelson
 * Dr. Kevin Schmidmayer
 * Dr. Vedran Coralic
@@ -32,18 +30,22 @@ for multi-component, multi-phase, and bubbly flows.
 
 ## MFC paper
 
-  The paper that describes the MFC's capabilities is located
-  <a href="https://github.com/ComputationalFlowPhysics/MFC-Caltech/raw/master/doc/MFC_paper.pdf">here.</a>
-  
+  The paper that describes the MFC's capabilities:
+* <a href="https://doi.org/10.1016/j.cpc.2020.107396">
+        S. H. Bryngelson, K. Schmidmayer, V. Coralic, K. Maeda, J. Meng, T. Colonius (2020) Computer Physics Communications 4655, 107396
+        </a>
 
 ## Related publications
 
   Several publications have used the MFC in various stages of its 
   development. A partial list is included here.
 
   Refereed journal publications:
-* <a href="https://arxiv.org/pdf/1903.08242.pdf">
-        K. Schmidmayer, S. H. Bryngelson, T. Colonius (2019) under review, arXiv: 1903.08242
+* <a href="https://asa.scitation.org/doi/full/10.1121/10.0000746">
+        S. H. Bryngelson and T. Colonius (2020) Journal of the Acoustical Society of America, Vol. 147, pp. 1126-1135
+        </a>
+* <a href="https://www.sciencedirect.com/science/article/pii/S0021999119307855">
+        K. Schmidmayer, S. H. Bryngelson, T. Colonius (2020) Journal of Computational Physics, Vol. 402, 109080
         </a>
 * <a href="http://colonius.caltech.edu/pdfs/BryngelsonSchmidmayerColonius2019.pdf">
         S. H. Bryngelson, K. Schmidmayer, T. Colonius (2019) International Journal of Multiphase Flow, Vol. 115, pp. 137-143  
@@ -146,7 +148,7 @@ If you do not have FFTW compiler, the library and
   then  
 `tar -zxf [your Silo archive]`  
 `cd [your Silo archive]`  
-`./configure --prefix=[target installation directory] --enable-pythonmodule --enable-optimization --disable-hzip --disable-fpzip --enableportable-binary FC=mpif90 F77=mpif77 -with-hdf5=[your hdf5 directory]/include,/[your hdf5 directory]/lib --disable-silex`  
+`./configure --prefix=[target installation directory] --enable-pythonmodule --enable-optimization --disable-hzip --disable-fpzip FC=mpif90 F77=mpif77 -with-hdf5=[your hdf5 directory]/include,/[your hdf5 directory]/lib --disable-silex`  
 `make`  
 `make install`