adjustments to vonMises

Author: mcarcana

src/common/m_variables_conversion.fpp

@@ -1034,7 +1034,7 @@ contains
                     end if
 #ifndef POST_PROCESS
                     ! to save von Mises stress instead of elastic internal energy
-                    qK_prim_vf(xiend+1)%sf(j, k, l) = sqrt((3/2)*qK_prim_vf(1)%sf(j, k, l)**2 + &
+                    qK_prim_vf(xiend+1)%sf(j, k, l) = sqrt((3d0/2d0)*qK_prim_vf(1)%sf(j, k, l)**2 + &
                                             2*qK_prim_vf(2)%sf(j, k, l)**2 + qK_prim_vf(3)%sf(j, k, l)**2 + &
                                             2*qK_prim_vf(4)%sf(j, k, l)**2 + 2*qK_prim_vf(5)%sf(j, k, l)**2 + &
                                             qK_prim_vf(6)%sf(j, k, l)**2)

src/post_process/m_start_up.f90

@@ -394,7 +394,10 @@ subroutine s_save_data(t_step, varname, pres, c, H)
                     call s_write_variable_to_formatted_database_file(varname, t_step)
                 end if
                 if (prim_vars_wrt) then
-                    q_sf = q_prim_vf(xiend+1)%sf(j, k, l)
+                    q_sf = q_prim_vf(xiend+1)%sf( &
+                           -offset_x%beg:m + offset_x%end, &
+                           -offset_y%beg:n + offset_y%end, &
+                           -offset_z%beg:p + offset_z%end)
                     write (varname, '(A,I0)') 'vonMises'
                     call s_write_variable_to_formatted_database_file(varname, t_step)
                 end if

submit_hyper.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 
-./mfc.sh run ./examples/3D_hyperelasticity/hyper_gel.py -p batch -N 1 -n 4 -g 0 -w 01:00:00 -# test1 -t pre_process -c oscar
-./mfc.sh run ./examples/3D_hyperelasticity/hyper_gel.py -p batch -N 1 -n 4 -g 0 -w 01:00:00 -# test1 -t simulation -c oscar
+#./mfc.sh run ./examples/3D_hyperelasticity/hyper_gel.py -p batch -N 1 -n 4 -g 0 -w 01:00:00 -# test1 -t pre_process -c oscar
+#./mfc.sh run ./examples/3D_hyperelasticity/hyper_gel.py -p batch -N 1 -n 4 -g 0 -w 01:00:00 -# test1 -t simulation -c oscar
 #./mfc.sh run /scratch/bciv/rodrigu1/cav2024/hyper/hyper_gel.py -p gpuA40x4 -N 1 -n 1 -g 1 -w 01:00:00 -# test1 -t post_process -a bciv-delta-gpu -c delta
 
-
+./mfc.sh run /projects/bciv/mcarcanabarbosa/ctr/gel/geldef.py -p gpuA100x4 -N 1 -n 4 -g 1 -w 01:00:00 -#gel25 -t post_process -a bciv-delta-gpu -c delta