From 6a96dd7bbfda6c45edda97b8a1faa3387e442420 Mon Sep 17 00:00:00 2001
From: Spencer Bryngelson <shb@gatech.edu>
Date: Sun, 10 Aug 2025 00:08:30 -0400
Subject: [PATCH 1/5] Update CMakeLists.txt

---
 CMakeLists.txt | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 921eedf66a..541f2e2d21 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -124,6 +124,7 @@ if (CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
         add_compile_options(
             $<$<COMPILE_LANGUAGE:Fortran>:-fprofile-arcs>
             $<$<COMPILE_LANGUAGE:Fortran>:-ftest-coverage>
+            $<$<COMPILE_LANGUAGE:Fortran>:-O0>
 	    )
 
         add_link_options(
@@ -360,6 +361,8 @@ macro(HANDLE_SOURCES target useCommon)
                                  -D chemistry=False
                                  --line-numbering
                                  --no-folding
+								 --line-length=999
+		 						 --line-numbering-mode=nocontlines
                                  "${fpp}" "${f90}"
             DEPENDS  "${fpp};${${target}_incs}"
             COMMENT  "Preprocessing (Fypp) ${fpp_filename}"

From 61095ed08d66d6853a287f7bb844326141ee03b3 Mon Sep 17 00:00:00 2001
From: Spencer Bryngelson <shb@gatech.edu>
Date: Sun, 10 Aug 2025 09:15:32 -0400
Subject: [PATCH 2/5] Update coverage.yml

---
 .github/workflows/coverage.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
index d2c1b4ea4a..ad0ea7a220 100644
--- a/.github/workflows/coverage.yml
+++ b/.github/workflows/coverage.yml
@@ -30,7 +30,9 @@ jobs:
       - name: Setup Ubuntu
         run: |
             sudo apt update -y
-            sudo apt install -y tar wget make cmake gcc g++ python3 python3-dev "openmpi-*" libopenmpi-dev libblas-dev liblapack-dev
+            sudo apt install -y tar wget make cmake gcc g++ python3 \
+                python3-dev "openmpi-*" libopenmpi-dev hdf5-tools \
+                libfftw3-dev libhdf5-dev libblas-dev liblapack-dev
 
       - name: Build
         run: /bin/bash mfc.sh build -j $(nproc) --gcov

From c104a384053062017e6dd6ad7d061e3a9cb30255 Mon Sep 17 00:00:00 2001
From: Spencer Bryngelson <shb@gatech.edu>
Date: Sun, 10 Aug 2025 09:16:39 -0400
Subject: [PATCH 3/5] Update CMakeLists.txt

---
 CMakeLists.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 541f2e2d21..b7f087c25b 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -124,7 +124,7 @@ if (CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
         add_compile_options(
             $<$<COMPILE_LANGUAGE:Fortran>:-fprofile-arcs>
             $<$<COMPILE_LANGUAGE:Fortran>:-ftest-coverage>
-            $<$<COMPILE_LANGUAGE:Fortran>:-O0>
+            $<$<COMPILE_LANGUAGE:Fortran>:-O1>
 	    )
 
         add_link_options(

From 530ef30f906da22f4964182e8189d07371ccb760 Mon Sep 17 00:00:00 2001
From: Spencer Bryngelson <shb@gatech.edu>
Date: Sun, 10 Aug 2025 13:19:44 -0400
Subject: [PATCH 4/5] Update codecov.yml

---
 .github/codecov.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/codecov.yml b/.github/codecov.yml
index f5a9dcf97b..b1a8afc001 100644
--- a/.github/codecov.yml
+++ b/.github/codecov.yml
@@ -1,6 +1,5 @@
 coverage:
   strict_yaml_branch: default
-  max_report_age: off
   status:
     project:
       default:

From 59f1b6f6d8a3285fda9abfcbb725d40e79b63530 Mon Sep 17 00:00:00 2001
From: Spencer Bryngelson <shb@gatech.edu>
Date: Sun, 10 Aug 2025 16:00:06 -0400
Subject: [PATCH 5/5] Update codecov.yml

---
 .github/codecov.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/codecov.yml b/.github/codecov.yml
index b1a8afc001..679a2f56f9 100644
--- a/.github/codecov.yml
+++ b/.github/codecov.yml
@@ -1,5 +1,4 @@
 coverage:
-  strict_yaml_branch: default
   status:
     project:
       default: