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* Import v2 from https://github.com/LennyN95/SlicerMHubRunner.git * Remove v1 leftovers; align tree with repoB * Update README.md Co-authored-by: Copilot <[email protected]> * fix: close opened file --------- Co-authored-by: Copilot <[email protected]>
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‎.DS_Store‎

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‎.github/workflows/lint.yml‎

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name: CI (Lint)
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on:
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# Triggers the workflow on push or pull request events
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push:
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branches: [main]
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pull_request:
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branches:
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- "*"
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permissions:
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contents: read
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jobs:
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lint:
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name: Lint
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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- uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v6.1.0
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with:
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python-version: "3.12"
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- uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1

‎.gitignore‎

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.DS_STORE
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__pycache__
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.ipynb_checkpoints/
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.vscode/*
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MRunner/docker_info_example.json
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MRunner/Resources/SampleData/*
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MRunner/ymldicomseg/meta2.json
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MRunner/ymldicomseg/test.ipynb
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MRunner/ymldicomseg/ymldicomseg.py
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MRunner/Resources/meta.yml
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MRunner/ymldicomseg/meta.yml
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MRunner/ymldicomseg/README.md
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MRunner/ymldicomseg/segclass.test.py
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MHubRunner/__pycache__/MHubRunner.cpython-39.pyc
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notes.md

‎.pre-commit-config.yaml‎

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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: "v6.0.0"
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hooks:
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- id: check-added-large-files
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args: ["--maxkb=1024"]
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- id: check-case-conflict
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- id: check-merge-conflict
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- id: check-symlinks
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- id: check-yaml
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- id: debug-statements
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- id: end-of-file-fixer
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- id: mixed-line-ending
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- id: trailing-whitespace
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- repo: https://github.com/asottile/pyupgrade
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rev: v3.21.2
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hooks:
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- id: pyupgrade
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args: [--py312-plus]

‎.vscode/launch.json‎

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{
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// Use IntelliSense to learn about possible attributes.
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// Hover to view descriptions of existing attributes.
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// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
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"version": "0.2.0",
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"configurations": [
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{
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"name": "Python: Attach",
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"type": "python",
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"request": "attach",
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"port": 5678,
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"host": "localhost"
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}
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]
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}

‎.vscode/settings.json‎

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{
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"python.analysis.typeCheckingMode": "basic"
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}

‎CMakeLists.txt‎

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set(EXTENSION_CONTRIBUTORS "Leonard Nürnberg (AIM, Mass General Brigham)")
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set(EXTENSION_DESCRIPTION "MHub Runner is a 3D Slicer plugin that seamlessly integrates Deep Learning models from the Medical Hub repository (MHub) into 3D Slicer.")
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set(EXTENSION_ICONURL "https://mhub.ai/slicer/SlicerMHubRunner.png")
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set(EXTENSION_SCREENSHOTURLS "https://mhub.ai/slicer/image01.png https://mhub.ai/slicer/image02.png https://mhub.ai/slicer/image03.png")
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set(EXTENSION_DEPENDS "NA") # Specified as a list or "NA" if no dependencies
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set(EXTENSION_SCREENSHOTURLS "https://mhub.ai/slicer/image01.png")
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set(EXTENSION_DEPENDS "QuantitativeReporting") # list of dependencies, space separated, e.g., '"d1" "d2" ...'
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#-----------------------------------------------------------------------------
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# Extension dependencies
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#-----------------------------------------------------------------------------
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# Extension modules
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add_subdirectory(MRunner)
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add_subdirectory(MHubRunner)
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## NEXT_MODULE
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#-----------------------------------------------------------------------------

‎LICENSE‎

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MIT License
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Copyright (c) 2023 MHub.ai
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Copyright (c) 2025 Leonard Nürnberg
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal

‎MHubRunner/.DS_Store‎

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MRunner/CMakeLists.txt renamed to MHubRunner/CMakeLists.txt

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#-----------------------------------------------------------------------------
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set(MODULE_NAME MRunner)
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set(MODULE_NAME MHubRunner)
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#-----------------------------------------------------------------------------
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set(MODULE_PYTHON_SCRIPTS
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set(MODULE_PYTHON_RESOURCES
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Resources/Icons/${MODULE_NAME}.png
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Resources/UI/${MODULE_NAME}.ui
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Utils/__init__.py
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Utils/Models.py
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Resources/MHub/models.json
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)
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#-----------------------------------------------------------------------------

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