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+repository = "https://github.com/MIC-DKFZ/batchgenerators" +keywords=[ + 'deep learning', + 'image segmentation', + 'image classification', + 'medical image analysis', + 'medical image segmentation', + 'data augmentation' +] + +[tool.poetry.dependencies] +python = "^3.7" +Pillow = ">=7.1.2" +numpy = ">=1.10.2" +scipy = "*" +scikit-image = "*" +scikit-learn = "*" +future = "*" +threadpoolctl = "*" + +[tool.poetry.dev-dependencies] +pytest = "^6.2.3" +Sphinx = "^3.5.4" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 4eecc7c..0000000 --- a/requirements.txt +++ /dev/null @@ -1,7 +0,0 @@ -pillow>=7.1.2 -threadpoolctl -scikit-learn -numpy>=1.10.2 -scipy -scikit-image -scikit-learn diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 224a779..0000000 --- a/setup.cfg +++ /dev/null @@ -1,2 +0,0 @@ -[metadata] -description-file = README.md \ No newline at end of file diff --git a/setup.py b/setup.py deleted file mode 100755 index ef0def0..0000000 --- a/setup.py +++ /dev/null @@ -1,24 +0,0 @@ -from setuptools import setup, find_packages - -setup(name='batchgenerators', - version='0.21', - description='Data augmentation toolkit', - url='https://github.com/MIC-DKFZ/batchgenerators', - author='Division of Medical Image Computing, German Cancer Research Center', - author_email='f.isensee@dkfz-heidelberg.de', - license='Apache License Version 2.0, January 2004', - packages=find_packages(exclude=["tests"]), - install_requires=[ - "pillow>=7.1.2", - "numpy>=1.10.2", - "scipy", - "scikit-image", - "scikit-learn", - "future", - "unittest2", - "threadpoolctl" - ], - keywords=['deep learning', 'image segmentation', 'image classification', 'medical image analysis', - 'medical image segmentation', 'data augmentation'], - download_url="https://github.com/MIC-DKFZ/batchgenerators/archive/v0.19.5.tar.gz" - ) diff --git a/tests/test_axis_mirroring.py b/tests/test_axis_mirroring.py index 1b4598c..19465e2 100644 --- a/tests/test_axis_mirroring.py +++ b/tests/test_axis_mirroring.py @@ -12,8 +12,6 @@ # See the License for the specific language governing permissions and # limitations under the License. import unittest - -import unittest2 import numpy as np from skimage import data @@ -22,7 +20,7 @@ from batchgenerators.transforms.spatial_transforms import MirrorTransform -class TestMirrorAxis(unittest2.TestCase): +class TestMirrorAxis(unittest.TestCase): def setUp(self): self.seed = 1234