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alistairewjalistairewj
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prettify bigquery json and update for mimic-iv v2.2
1 parent 8166a70 commit 2d5fed8

31 files changed

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lines changed

‎mimic-iv/buildmimic/bigquery/schemas/hosp/admissions.json‎

Lines changed: 82 additions & 1 deletion
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[{"name": "subject_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "hadm_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "admittime", "type": "DATETIME", "mode": "REQUIRED"}, {"name": "dischtime", "type": "DATETIME", "mode": "NULLABLE"}, {"name": "deathtime", "type": "DATETIME", "mode": "NULLABLE"}, {"name": "admission_type", "type": "STRING", "mode": "REQUIRED"}, {"name": "admission_location", "type": "STRING", "mode": "NULLABLE"}, {"name": "discharge_location", "type": "STRING", "mode": "NULLABLE"}, {"name": "insurance", "type": "STRING", "mode": "NULLABLE"}, {"name": "language", "type": "STRING", "mode": "NULLABLE"}, {"name": "marital_status", "type": "STRING", "mode": "NULLABLE"}, {"name": "race", "type": "STRING", "mode": "NULLABLE"}, {"name": "edregtime", "type": "DATETIME", "mode": "NULLABLE"}, {"name": "edouttime", "type": "DATETIME", "mode": "NULLABLE"}, {"name": "hospital_expire_flag", "type": "INT64", "mode": "NULLABLE"}]
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[
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{
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"name": "subject_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "hadm_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "admittime",
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"type": "DATETIME",
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"mode": "REQUIRED"
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},
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{
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"name": "dischtime",
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"type": "DATETIME",
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"mode": "NULLABLE"
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},
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{
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"name": "deathtime",
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"type": "DATETIME",
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"mode": "NULLABLE"
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},
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{
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"name": "admission_type",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "admit_provider_id",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "admission_location",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "discharge_location",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "insurance",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "language",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "marital_status",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "race",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "edregtime",
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"type": "DATETIME",
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"mode": "NULLABLE"
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},
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{
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"name": "edouttime",
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"type": "DATETIME",
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"mode": "NULLABLE"
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},
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{
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"name": "hospital_expire_flag",
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"type": "INT64",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/d_hcpcs.json‎

Lines changed: 22 additions & 1 deletion
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[{"name": "code", "type": "STRING", "mode": "REQUIRED"}, {"name": "category", "type": "INT64", "mode": "NULLABLE"}, {"name": "long_description", "type": "STRING", "mode": "NULLABLE"}, {"name": "short_description", "type": "STRING", "mode": "NULLABLE"}]
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[
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{
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"name": "code",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "category",
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"type": "INT64",
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"mode": "NULLABLE"
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},
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{
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"name": "long_description",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "short_description",
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"type": "STRING",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/d_icd_diagnoses.json‎

Lines changed: 17 additions & 1 deletion
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[{"name": "icd_code", "type": "STRING", "mode": "REQUIRED"}, {"name": "icd_version", "type": "INT64", "mode": "REQUIRED"}, {"name": "long_title", "type": "STRING", "mode": "NULLABLE"}]
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[
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{
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"name": "icd_code",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "icd_version",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "long_title",
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"type": "STRING",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/d_icd_procedures.json‎

Lines changed: 17 additions & 1 deletion
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[{"name": "icd_code", "type": "STRING", "mode": "REQUIRED"}, {"name": "icd_version", "type": "INT64", "mode": "REQUIRED"}, {"name": "long_title", "type": "STRING", "mode": "NULLABLE"}]
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[
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{
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"name": "icd_code",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "icd_version",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "long_title",
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"type": "STRING",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/d_labitems.json‎

Lines changed: 22 additions & 1 deletion
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[{"name": "itemid", "type": "INT64", "mode": "REQUIRED"}, {"name": "label", "type": "STRING", "mode": "NULLABLE"}, {"name": "fluid", "type": "STRING", "mode": "NULLABLE"}, {"name": "category", "type": "STRING", "mode": "NULLABLE"}]
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[
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{
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"name": "itemid",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "label",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "fluid",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "category",
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"type": "STRING",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/diagnoses_icd.json‎

Lines changed: 27 additions & 1 deletion
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[{"name": "subject_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "hadm_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "seq_num", "type": "INT64", "mode": "REQUIRED"}, {"name": "icd_code", "type": "STRING", "mode": "NULLABLE"}, {"name": "icd_version", "type": "INT64", "mode": "NULLABLE"}]
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[
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{
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"name": "subject_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "hadm_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "seq_num",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "icd_code",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "icd_version",
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"type": "INT64",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/drgcodes.json‎

Lines changed: 37 additions & 1 deletion
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[{"name": "subject_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "hadm_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "drg_type", "type": "STRING", "mode": "NULLABLE"}, {"name": "drg_code", "type": "STRING", "mode": "REQUIRED"}, {"name": "description", "type": "STRING", "mode": "NULLABLE"}, {"name": "drg_severity", "type": "INT64", "mode": "NULLABLE"}, {"name": "drg_mortality", "type": "INT64", "mode": "NULLABLE"}]
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[
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{
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"name": "subject_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "hadm_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "drg_type",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "drg_code",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "description",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "drg_severity",
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"type": "INT64",
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"mode": "NULLABLE"
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},
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{
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"name": "drg_mortality",
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"type": "INT64",
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"mode": "NULLABLE"
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}
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]

‎mimic-iv/buildmimic/bigquery/schemas/hosp/emar.json‎

Lines changed: 62 additions & 1 deletion
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[{"name": "subject_id", "type": "INT64", "mode": "REQUIRED"}, {"name": "hadm_id", "type": "INT64", "mode": "NULLABLE"}, {"name": "emar_id", "type": "STRING", "mode": "REQUIRED"}, {"name": "emar_seq", "type": "INT64", "mode": "REQUIRED"}, {"name": "poe_id", "type": "STRING", "mode": "REQUIRED"}, {"name": "pharmacy_id", "type": "INT64", "mode": "NULLABLE"}, {"name": "charttime", "type": "DATETIME", "mode": "REQUIRED"}, {"name": "medication", "type": "STRING", "mode": "NULLABLE"}, {"name": "event_txt", "type": "STRING", "mode": "NULLABLE"}, {"name": "scheduletime", "type": "DATETIME", "mode": "NULLABLE"}, {"name": "storetime", "type": "DATETIME", "mode": "REQUIRED"}]
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[
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{
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"name": "subject_id",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "hadm_id",
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"type": "INT64",
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"mode": "NULLABLE"
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},
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{
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"name": "emar_id",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "emar_seq",
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"type": "INT64",
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"mode": "REQUIRED"
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},
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{
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"name": "poe_id",
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"type": "STRING",
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"mode": "REQUIRED"
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},
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{
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"name": "pharmacy_id",
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"type": "INT64",
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"mode": "NULLABLE"
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},
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{
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"name": "enter_provider_id",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "charttime",
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"type": "DATETIME",
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"mode": "REQUIRED"
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},
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{
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"name": "medication",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "event_txt",
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"type": "STRING",
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"mode": "NULLABLE"
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},
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{
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"name": "scheduletime",
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"type": "DATETIME",
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"mode": "NULLABLE"
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},
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{
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"name": "storetime",
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"type": "DATETIME",
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"mode": "REQUIRED"
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}
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]

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