add load.sql and load_7z.sql for mimic-iv-note psql

Author: alistairewj

mimic-iv-note/buildmimic/postgres/load.sql

@@ -0,0 +1,15 @@
+---------------------------------------------
+-- Load data into the MIMIC-IV-Note schema --
+---------------------------------------------
+
+-- To run from a terminal:
+--  psql "dbname=<DBNAME> user=<USER>" -v mimic_data_dir=<PATH TO DATA DIR> -f load_gz.sql
+\cd :mimic_data_dir
+
+-- making sure that all tables are emtpy and correct encoding is defined -utf8- 
+SET CLIENT_ENCODING TO 'utf8';
+
+\COPY mimiciv_note.discharge FROM 'discharge.csv' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.radiology FROM 'radiology.csv' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.discharge_detail FROM 'discharge_detail.csv' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.radiology_detail FROM 'radiology_detail.csv' DELIMITER ',' CSV HEADER NULL '';

mimic-iv-note/buildmimic/postgres/load_7z.sql

@@ -0,0 +1,15 @@
+-----------------------------------------
+-- Load data into the MIMIC-IV-Note schemas --
+-----------------------------------------
+
+-- To run from a terminal:
+--  psql "dbname=<DBNAME> user=<USER>" -v mimic_data_dir=<PATH TO DATA DIR> -f load_gz.sql
+\cd :mimic_data_dir
+
+-- making sure that all tables are emtpy and correct encoding is defined -utf8- 
+SET CLIENT_ENCODING TO 'utf8';
+
+\COPY mimiciv_note.discharge FROM PROGRAM '7z e -so discharge.csv.gz' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.radiology FROM PROGRAM '7z e -so radiology.csv.gz' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.discharge_detail FROM PROGRAM '7z e -so discharge_detail.csv.gz' DELIMITER ',' CSV HEADER NULL '';
+\COPY mimiciv_note.radiology_detail FROM PROGRAM '7z e -so radiology_detail.csv.gz' DELIMITER ',' CSV HEADER NULL '';