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Add vital signs mapping for MIMIC-IV v2.0 SSSOM standard
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‎mimic-iv/concepts/concept_map/chartevents_to_loinc.csv‎

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subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,reviewer_id,confidence,comment
2+
mimic:220045,Heart Rate,skos:exactMatch,loinc:8867-4,Heart rate,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
3+
mimic:220210,Respiratory Rate,skos:exactMatch,loinc:9279-1,Respiratory rate,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
4+
mimic:220277,O2 saturation pulseoxymetry,skos:exactMatch,loinc:59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
5+
mimic:220179,Non Invasive Blood Pressure systolic,skos:exactMatch,loinc:76534-7,Systolic blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
6+
mimic:220180,Non Invasive Blood Pressure diastolic,skos:exactMatch,loinc:76535-4,Diastolic blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
7+
mimic:220181,Non Invasive Blood Pressure mean,skos:exactMatch,loinc:76536-2,Mean blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
8+
mimic:220052,Arterial Blood Pressure mean,skos:exactMatch,loinc:8478-0,Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
9+
mimic:220050,Arterial Blood Pressure systolic,skos:exactMatch,loinc:8480-6,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
10+
mimic:220051,Arterial Blood Pressure diastolic,skos:exactMatch,loinc:8462-4,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
11+
mimic:223761,Temperature Fahrenheit,skos:exactMatch,loinc:8310-5,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
12+
mimic:220060,Pulmonary Artery Pressure diastolic,skos:exactMatch,loinc:8385-7,Pulmonary artery Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
13+
mimic:220059,Pulmonary Artery Pressure systolic,skos:exactMatch,loinc:8440-0,Pulmonary artery Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
14+
mimic:220061,Pulmonary Artery Pressure mean,skos:exactMatch,loinc:8414-5,Pulmonary artery Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
15+
mimic:223762,Temperature Celsius,skos:exactMatch,loinc:8310-5,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
16+
mimic:225312,ART BP Mean,skos:exactMatch,loinc:8478-0,Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
17+
mimic:225309,ART BP Systolic,skos:exactMatch,loinc:8480-6,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
18+
mimic:225310,ART BP Diastolic,skos:exactMatch,loinc:8462-4,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
19+
mimic:226329,Blood Temperature CCO (C),skos:exactMatch,loinc:60834-9,Blood temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
20+
mimic:226531,Admission Weight (lbs.),skos:exactMatch,loinc:29463-7,Body weight,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
21+
mimic:228640,EtCO2,skos:exactMatch,loinc:19891-1,Carbon dioxide [Partial pressure] in Exhaled gas --at end expiration,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
22+
mimic:226512,Admission Weight (Kg),skos:exactMatch,loinc:29463-7,Body weight,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
23+
mimic:227632,Arctic Sun/Alsius Temp #1 C,skos:closeMatch,loinc:8310-5,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,0.8,
24+
mimic:227634,Arctic Sun/Alsius Temp #2 C,skos:closeMatch,loinc:8310-5,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,0.8,
25+
mimic:226707,Height,skos:exactMatch,loinc:8302-2,Body height,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
26+
mimic:226730,Height (cm),skos:exactMatch,loinc:8302-2,Body height,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
27+
mimic:223763,Bladder Pressure,,,,,,,,No suitable LOINC code
28+
mimic:224359,QTc,skos:exactMatch,loinc:8636-3,Q-T interval corrected,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
29+
mimic:224167,Manual Blood Pressure Systolic Left,skos:closeMatch,loinc:8480-6,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
30+
mimic:224643,Manual Blood Pressure Diastolic Left,skos:closeMatch,loinc:8462-4,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
31+
mimic:227243,Manual Blood Pressure Systolic Right,skos:closeMatch,loinc:8480-6,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
32+
mimic:227242,Manual Blood Pressure Diastolic Right,skos:closeMatch,loinc:8462-4,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
33+
mimic:224192,Pulsus Paradoxus,skos:exactMatch,loinc:8452-5,Systolic blood pressure.inspiration - expiration,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
34+
mimic:224646,Orthostatic BPs sitting,skos:exactMatch,loinc:8459-0,Systolic blood pressure--sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
35+
mimic:226094,Orthostatic BPd sitting,skos:exactMatch,loinc:8453-3,Diastolic blood pressure--sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
36+
mimic:224645,Orthostatic BPs lying,skos:exactMatch,loinc:8461-6,Systolic blood pressure--supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
37+
mimic:226092,Orthostatic BPd lying,skos:exactMatch,loinc:8455-8,Diastolic blood pressure--supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
38+
mimic:223765,Orthostatic HR sitting,skos:exactMatch,loinc:69000-8,Heart rate --sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
39+
mimic:224166,Doppler BP,,,,,,,,No suitable LOINC code
40+
mimic:223766,Orthostatic BPs standing,skos:exactMatch,loinc:8460-8,Systolic blood pressure--standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
41+
mimic:226096,Orthostatic BPd standing,skos:exactMatch,loinc:8454-1,Diastolic blood pressure--standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
42+
mimic:223764,Orthostatic HR lying,skos:exactMatch,loinc:68999-2,Heart rate --supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
43+
mimic:224647,Orthostatic HR standing,skos:exactMatch,loinc:69001-6,Heart rate --standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,

‎mimic-iv/concepts/concept_map/chartevents_to_omop.csv‎

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subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,reviewer_id,confidence,comment
2+
mimic:220045,Heart Rate,skos:exactMatch,omop:3027018,Heart rate,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
3+
mimic:220210,Respiratory Rate,skos:exactMatch,omop:3024171,Respiratory rate,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
4+
mimic:220277,O2 saturation pulseoxymetry,skos:exactMatch,omop:40762499,Oxygen saturation in Arterial blood by Pulse oximetry,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
5+
mimic:220179,Non Invasive Blood Pressure systolic,skos:exactMatch,omop:21492239,Systolic blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
6+
mimic:220180,Non Invasive Blood Pressure diastolic,skos:exactMatch,omop:21492240,Diastolic blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
7+
mimic:220181,Non Invasive Blood Pressure mean,skos:exactMatch,omop:21492241,Mean blood pressure by Noninvasive,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
8+
mimic:220052,Arterial Blood Pressure mean,skos:exactMatch,omop:3027598,Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
9+
mimic:220050,Arterial Blood Pressure systolic,skos:exactMatch,omop:3004249,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
10+
mimic:220051,Arterial Blood Pressure diastolic,skos:exactMatch,omop:3012888,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
11+
mimic:223761,Temperature Fahrenheit,skos:exactMatch,omop:3020891,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
12+
mimic:220060,Pulmonary Artery Pressure diastolic,skos:exactMatch,omop:3017188,Pulmonary artery Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
13+
mimic:220059,Pulmonary Artery Pressure systolic,skos:exactMatch,omop:3005606,Pulmonary artery Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
14+
mimic:220061,Pulmonary Artery Pressure mean,skos:exactMatch,omop:3028074,Pulmonary artery Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
15+
mimic:223762,Temperature Celsius,skos:exactMatch,omop:3020891,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
16+
mimic:225312,ART BP Mean,skos:exactMatch,omop:3027598,Mean blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
17+
mimic:225309,ART BP Systolic,skos:exactMatch,omop:3004249,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
18+
mimic:225310,ART BP Diastolic,skos:exactMatch,omop:3012888,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
19+
mimic:226329,Blood Temperature CCO (C),skos:exactMatch,omop:21490586,Blood temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
20+
mimic:226531,Admission Weight (lbs.),skos:exactMatch,omop:3025315,Body weight,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
21+
mimic:228640,EtCO2,skos:exactMatch,omop:3035357,Carbon dioxide [Partial pressure] in Exhaled gas --at end expiration,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
22+
mimic:226512,Admission Weight (Kg),skos:exactMatch,omop:3025315,Body weight,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
23+
mimic:227632,Arctic Sun/Alsius Temp #1 C,skos:closeMatch,omop:3020891,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,0.8,
24+
mimic:227634,Arctic Sun/Alsius Temp #2 C,skos:closeMatch,omop:3020891,Body temperature,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,0.8,
25+
mimic:226707,Height,skos:exactMatch,omop:3036277,Body height,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
26+
mimic:226730,Height (cm),skos:exactMatch,omop:3036277,Body height,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
27+
mimic:223763,Bladder Pressure,,,,,,,,No suitable LOINC code
28+
mimic:224359,QTc,skos:exactMatch,omop:3026258,Q-T interval corrected,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
29+
mimic:224167,Manual Blood Pressure Systolic Left,skos:closeMatch,omop:3004249,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
30+
mimic:224643,Manual Blood Pressure Diastolic Left,skos:closeMatch,omop:3012888,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
31+
mimic:227243,Manual Blood Pressure Systolic Right,skos:closeMatch,omop:3004249,Systolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
32+
mimic:227242,Manual Blood Pressure Diastolic Right,skos:closeMatch,omop:3012888,Diastolic blood pressure,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
33+
mimic:224192,Pulsus Paradoxus,skos:exactMatch,omop:3034464,Systolic blood pressure.inspiration - expiration,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
34+
mimic:224646,Orthostatic BPs sitting,skos:exactMatch,omop:3018586,Systolic blood pressure--sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
35+
mimic:226094,Orthostatic BPd sitting,skos:exactMatch,omop:3034703,Diastolic blood pressure--sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
36+
mimic:224645,Orthostatic BPs lying,skos:exactMatch,omop:3009395,Systolic blood pressure--supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
37+
mimic:226092,Orthostatic BPd lying,skos:exactMatch,omop:3013940,Diastolic blood pressure--supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
38+
mimic:223765,Orthostatic HR sitting,skos:exactMatch,omop:40771525,Heart rate --sitting,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
39+
mimic:224166,Doppler BP,,,,,,,,No suitable LOINC code
40+
mimic:223766,Orthostatic BPs standing,skos:exactMatch,omop:3035856,Systolic blood pressure--standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
41+
mimic:226096,Orthostatic BPd standing,skos:exactMatch,omop:3019962,Diastolic blood pressure--standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
42+
mimic:223764,Orthostatic HR lying,skos:exactMatch,omop:40771524,Heart rate --supine,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,
43+
mimic:224647,Orthostatic HR standing,skos:exactMatch,omop:40771526,Heart rate --standing,HumanCurated,orcid:0000-0001-8822-1884,orcid:0000-0002-9348-9284,1,

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