simplify iv module organization

Author: alistairewj

jekyll-site/_docs/cxr/index.md

@@ -1,5 +1,5 @@
 ---
-title: "Chest X-Ray (CXR)"
+title: "MIMIC-CXR (Chest X-Ray)"
 layout: default
 nav_order: 24
 has_children: true
@@ -10,20 +10,6 @@ permalink: /docs/cxr/
 
 MIMIC-CXR provides chest X-ray images and radiology reports for a subset of patients admitted to the emergency department. This module contains:
 
-- High-resolution chest X-ray images
+- High-resolution chest X-ray images formatted as DICOM files
 - Associated radiology reports
-- Study metadata and timing
-- Image processing information
-
-## Tables in this Module
-
-The CXR module contains tables for:
-
-- **mimic_cxr_studies** - Study-level metadata
-- **mimic_cxr_metadata** - Image metadata  
-- **mimic_cxr_reports** - Radiology reports
-- **mimic_cxr_sectioned** - Sectioned radiology reports
-- **mimic_cxr_chexpert** - CheXpert labels
-- **mimic_cxr_negbio** - NegBio labels
-
-This module enables research combining medical imaging with clinical data from the same patients.
+- Deidentified study metadata and timing (in the DICOM header)

jekyll-site/_docs/iv/modules/ecg/index.md jekyll-site/_docs/ecg/index.mdjekyll-site/_docs/iv/modules/ecg/index.md renamed to jekyll-site/_docs/ecg/index.md

@@ -8,14 +8,16 @@ has_children: true
 permalink: /docs/iv/modules/ecg/
 ---
 
+{: .note }
+> The deidentified free-text reports for ECGs have not been published yet.
+
 # ECG Module
 
 The ECG module contains electrocardiogram waveform data and measurements. This includes:
 
 - High-frequency ECG waveforms
 - Automated measurements
-- Clinical annotations
-- Study metadata
+- Related metadata (height, weight, etc).
 
 ## Tables in this Module
 

jekyll-site/_docs/ed/index.md

@@ -1,5 +1,5 @@
 ---
-title: "Emergency Department (ED)"
+title: "MIMIC-IV-ED (Emergency Department)"
 layout: default
 nav_order: 25
 has_children: true

…kyll-site/_docs/iv/modules/hosp/index.md jekyll-site/_docs/iv/hosp/index.mdjekyll-site/_docs/iv/modules/hosp/index.md renamed to jekyll-site/_docs/iv/hosp/index.md jekyll-site/_docs/iv/modules/hosp/index.md renamed to jekyll-site/_docs/iv/hosp/index.md

@@ -1,8 +1,7 @@
 ---
 title: "Hospital Module"
 layout: default
-parent: "MIMIC-IV Modules"
-grand_parent: "MIMIC-IV"
+parent: "MIMIC-IV"
 nav_order: 2
 has_children: true
 permalink: /docs/iv/modules/hosp/

…l-site/_docs/iv/modules/icu/caregiver.md jekyll-site/_docs/iv/icu/caregiver.mdjekyll-site/_docs/iv/modules/icu/caregiver.md renamed to jekyll-site/_docs/iv/icu/caregiver.md jekyll-site/_docs/iv/modules/icu/caregiver.md renamed to jekyll-site/_docs/iv/icu/caregiver.md

@@ -1,8 +1,7 @@
 ---
 title: "ICU Module"
 layout: default
-parent: "MIMIC-IV Modules"
-grand_parent: "MIMIC-IV"
+parent: "MIMIC-IV"
 nav_order: 1
 has_children: true
 permalink: /docs/iv/modules/icu/

jekyll-site/_docs/iv/modules/icu/index.md jekyll-site/_docs/iv/icu/index.mdjekyll-site/_docs/iv/modules/icu/index.md renamed to jekyll-site/_docs/iv/icu/index.md

@@ -22,13 +22,8 @@ MIMIC-IV is the latest version of the MIMIC Critical Care Database. It contains
 
 MIMIC-IV is organized into modules based on the source of the data:
 
-### Core Module
-Patient demographics, admission tracking, and stay information.
-
-[Explore Modules →]({{ "/docs/iv/modules/" | relative_url }}){: .btn .btn-outline }
-
 ### Hospital (Hosp) Module  
-Data from the hospital-wide electronic health record including lab results, medications, diagnoses, and procedures.
+Data from the hospital-wide electronic health record including patient demographics, admission tracking, stay information, lab results, medications, diagnoses, and procedures.
 
 [Explore Hosp Module →]({{ "/docs/iv/modules/hosp/" | relative_url }}){: .btn .btn-outline }
 
@@ -37,24 +32,21 @@ Highly granular data from the ICU including vital signs, fluid balance, and char
 
 [Explore ICU Module →]({{ "/docs/iv/modules/icu/" | relative_url }}){: .btn .btn-outline }
 
-### Emergency Department (ED) Module
+## Link to other databases
+
+MIMIC-IV is linkable to other MIMIC datasets including MIMIC-CXR, MIMIC-IV-ED, and MIMIC-IV-Note.
+
+### Emergency Department (ED) Modu
 Emergency department data including triage, vital signs, and treatment information.
 
-[Explore ED Module →]({{ "/docs/iv/modules/ed/" | relative_url }}){: .btn .btn-outline }
+[Explore ED Module →]({{ "/docs/ed/" | relative_url }}){: .btn .btn-outline }
 
 ### Chest X-Ray (CXR) Module
 Chest X-ray images and associated radiology reports.
 
-[Explore CXR Module →]({{ "/docs/iv/modules/cxr/" | relative_url }}){: .btn .btn-outline }
+[Explore CXR Module →]({{ "/docs/cxr/" | relative_url }}){: .btn .btn-outline }
 
 ### Note Module
 De-identified clinical notes and reports.
 
-[Explore Note Module →]({{ "/docs/iv/modules/note/" | relative_url }}){: .btn .btn-outline }
-
-## Getting Started with MIMIC-IV
-
-1. **Understand the structure** - Review the [modular organization]({{ "/docs/iv/modules/" | relative_url }})
-2. **Learn about identifiers** - Understand how patients are [linked across modules]({{ "/docs/iv/about/" | relative_url }})
-3. **Try the tutorials** - Start with [MIMIC-IV tutorials]({{ "/docs/iv/tutorials/" | relative_url }})
-4. **Explore concepts** - See [core concepts]({{ "/docs/iv/about/concepts/" | relative_url }})
+[Explore Note Module →]({{ "/docs/note/" | relative_url }}){: .btn .btn-outline }