provide group level FNs

Author: MLDataAnalytics

pyproject.toml

@@ -4,14 +4,21 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name="fmripnet"
-version="1.0.1a"
+version="1.0.1c"
 description="pNet: a python package for computing personalized fucntional networks"
 readme = "README.md"
 requires-python = ">=3.8"
 classifiers=[
   "Programming Language :: Python :: 3",
   "Operating System :: OS Independent",
 ]
+dependencies = [
+        'ggplot',
+        'matplotlib',
+        'plotnine',
+        'statsmodels',
+        'surfplot',
+        'tomli']
 
 [project.urls]
 Homepage= "https://github.com/MLDataAnalytics/pNet"

setup.py

@@ -5,7 +5,7 @@
 
 setup(
     name="fmri_pnet",
-    version="1.0.1a",
+    version="1.0.1c",
     description="pNet: a python package for computing personalized fucntional networks",
     long_description=long_description,
     long_description_content_type="text/markdown",
@@ -24,7 +24,8 @@
  	"pnet.Brain_Template.HCP_Surface_Volume": ["*.mat", "*.zip", "*.log", "*.gz"],
 	"pnet.Brain_Template.HCP_Volume": ["*.mat", "*.zip", "*.log", "*.gz"],
 	"pnet.Brain_Template.MNI_Volume": ["*.mat", "*.zip", "*.log", "*.gz"],
-    "pnet.examples":["*.toml", "*.txt"]
+    "pnet.examples":["*.toml", "*.txt"],
+    "pnet.Group_FNs":["*.mat"]
     },
     include_package_data = True,
     install_requires=[

src/pnet/.idea/.name

@@ -506,7 +506,7 @@ def run_FN_computation_torch_cluster(dir_pnet_result: str):
 
         else:  # use precomputed gFNs
             file_gFN = setting['FN_Computation']['Group_FN']['file_gFN']
-            gFN, _, _ = load_matlab_single_array(file_gFN)
+            gFN = load_matlab_single_array(file_gFN)
             if dataType == 'Volume':
                 Brain_Mask = load_brain_template(os.path.join(dir_pnet_dataInput, 'Brain_Template.json.zip'))['Brain_Mask']
                 gFN = reshape_FN(gFN, dataType=dataType, Brain_Mask=Brain_Mask)
@@ -625,4 +625,4 @@ def run_FN_computation_torch_cluster(dir_pnet_result: str):
                     flag_complete[scan - 1] = 1
         # ============================================= #
 
-    print('Finished FN computation at ' + time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(time.time())), flush=True)
+    print('Finished FN computation at ' + time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(time.time())), flush=True)