@@ -121,16 +121,6 @@ jobs:
121121 working-directory : modflow6
122122 run : pixi run pip install xugrid xarray netcdf4
123123
124- - name : Setup Micromamba
125- uses : mamba-org/setup-micromamba@v1
126- with :
127- environment-file : modflow6/environment.yml
128- cache-downloads : true
129- cache-environment : true
130- init-shell : >-
131- bash
132- powershell
133-
134124 - name : Setup ${{ matrix.compiler }} ${{ matrix.version }}
135125 if : (!(runner.os == 'Windows' && matrix.extended))
136126 id : setup-fortran
@@ -156,7 +146,7 @@ jobs:
156146 working-directory : modflow6/distribution
157147 run : |
158148 ver="${{ steps.set_version.outputs.version }}"
159- cmd="python update_version.py -v $ver"
149+ cmd="pixi run update-version -v $ver"
160150 if [[ "${{ inputs.approve }}" == "true" ]]; then
161151 cmd="$cmd --approve"
162152 fi
@@ -168,7 +158,7 @@ jobs:
168158 - name : Get OS tag
169159 id : ostag
170160 run : |
171- ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
161+ ostag=$(pixi run python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())")
172162 if [[ "${{ matrix.extended }}" == "true" ]]; then
173163 ostag="${ostag}ext"
174164 fi
@@ -196,16 +186,16 @@ jobs:
196186 if : (!(runner.os == 'Windows' && matrix.extended))
197187 working-directory : modflow6
198188 run : |
199- meson setup builddir --prefix=$(pwd) --libdir=bin -Doptimization=${{ matrix.optimization }}
200- meson install -C builddir
201- meson test --verbose --no-rebuild -C builddir
189+ pixi run setup builddir -Doptimization=${{ matrix.optimization }}
190+ pixi run build builddir
191+ pixi run test builddir
202192
203193 - name : Build mf5to6 converter
204194 if : (!(runner.os == 'Windows' && matrix.extended))
205- working-directory : modflow6/utils/mf5to6
195+ working-directory : modflow6
206196 run : |
207- meson setup builddir --prefix=$(pwd)/../../ --libdir=bin -Doptimization=${{ matrix.optimization }}
208- meson install -C builddir
197+ pixi run setup-mf5to6 builddir -Doptimization=${{ matrix.optimization }}
198+ pixi run build-mf5to6 builddir
209199
210200 - name : Check architecture (macOS)
211201 working-directory : modflow6/bin
@@ -290,18 +280,18 @@ jobs:
290280 if : inputs.run_tests == true && runner.os != 'Windows'
291281 working-directory : modflow6
292282 run : |
293- cmd="python -m flopy.mf6.utils.generate_classes --dfnpath doc/mf6io/mf6ivar/dfn "
283+ cmd="pixi run update-flopy "
294284 if [[ "${{ inputs.developmode }}" == "false" ]]; then
295285 cmd="$cmd --releasemode"
296286 fi
297287 eval "$cmd"
298288
299289 - name : Get executables
300290 if : inputs.run_tests == true && runner.os != 'Windows'
301- working-directory : modflow6/autotest
291+ working-directory : modflow6
302292 env :
303293 GITHUB_TOKEN : ${{ github.token }}
304- run : pytest -v --durations 0 get_exes.py
294+ run : pixi run get-exes -s
305295
306296 - name : Set markers
307297 if : inputs.run_tests == true && runner.os != 'Windows'
@@ -326,25 +316,25 @@ jobs:
326316
327317 - name : Test MF6
328318 if : inputs.run_tests == true && runner.os != 'Windows'
329- working-directory : modflow6/autotest
319+ working-directory : modflow6
330320 env :
331321 REPOS_PATH : ${{ github.workspace }}
332- run : pytest -v -n auto -m "${{ steps.set_markers.outputs.markers }} and not external" -k "${{ steps.set_filters.outputs.filters }}"
322+ run : pixi run autotest -m "${{ steps.set_markers.outputs.markers }} and not external" -k "${{ steps.set_filters.outputs.filters }}"
333323
334324 - name : Test MF6 models
335325 if : inputs.run_tests == true && runner.os != 'Windows'
336- working-directory : modflow6/autotest
326+ working-directory : modflow6
337327 env :
338328 REPOS_PATH : ${{ github.workspace }}
339- run : pytest -v -n auto -m "${{ steps.set_markers.outputs.markers }} and external" -k "${{ steps.set_filters.outputs.filters }}" --models-path ../../modflow6-testmodels/mf6
329+ run : pixi run autotest -m "${{ steps.set_markers.outputs.markers }} and external" -k "${{ steps.set_filters.outputs.filters }}" --models-path ../../modflow6-testmodels/mf6
340330
341331 - name : Test converter models
342332 if : inputs.run_tests == true && runner.os != 'Windows'
343- working-directory : modflow6/autotest
333+ working-directory : modflow6
344334 env :
345335 REPOS_PATH : ${{ github.workspace }}
346- run : pytest -v -n auto -m "${{ steps.set_markers.outputs.markers }} and external" -k "${{ steps.set_filters.outputs.filters }}" --models-path ../../modflow6-testmodels/mf5to6 --namefile-pattern "*.nam"
347-
336+ run : pixi run autotest -m "${{ steps.set_markers.outputs.markers }} and external" -k "${{ steps.set_filters.outputs.filters }}" --models-path ../../modflow6-testmodels/mf5to6 --namefile-pattern "*.nam"
337+
348338 - name : Upload failed test output
349339 if : failure()
350340 uses : actions/upload-artifact@v4
@@ -378,10 +368,10 @@ jobs:
378368
379369 - name : Test distribution scripts
380370 if : ${{ inputs.run_tests == true && runner.os != 'Windows' }}
381- working-directory : modflow6/distribution
371+ working-directory : modflow6
382372 env :
383373 GITHUB_TOKEN : ${{ github.token }}
384- run : pytest -v --durations 0
374+ run : pixi run test-dist-scripts
385375
386376 docs :
387377 name : Build docs
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