Tweak dependencies in tests #1113
Workflow file for this run
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| # main test workflow; ported from .travis.yaml | |
| name: main | |
| on: | |
| push: | |
| branches: [ '*', $default-branch ] | |
| tags: ['[0-9]*'] # anything looks like a version. | |
| pull_request: | |
| branches: [ $default-branch ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| OMPI_MCA_rmaps_base_no_oversubscribe: 0 | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 | |
| OMPI_MCA_mpi_yield_when_idle: 1 | |
| OMPI_MCA_mpi_show_mca_params: 1 | |
| defaults: | |
| run: | |
| shell: bash -l {0} # for conda. | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest ] | |
| python-version: [ '3.8', '3.10', '3.13' ] | |
| steps: | |
| - name: Checkout source code | |
| uses: actions/checkout@v4 | |
| - name: Cache conda | |
| if: matrix.os == 'macos-latest' | |
| uses: actions/cache@v4 | |
| env: | |
| # Increase this value to reset cache. | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }} | |
| - name: Setup Conda Environment | |
| if: matrix.os == 'macos-latest' | |
| uses: conda-incubator/setup-miniconda@v3.2.0 | |
| with: | |
| activate-environment: test | |
| channels: bccp,conda-forge | |
| show-channel-urls: true | |
| use-only-tar-bz2: true | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup mac test env | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| conda install -q -y \ | |
| python=${{ matrix.python-version }} \ | |
| numpy cython mpi4py compilers | |
| conda install -q -y cmake gsl pytest pytest-mpi | |
| - name: Setup linux test env | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt update | |
| sudo apt install -y build-essential libopenmpi-dev openmpi-bin python3-numpy cython3 python3-mpi4py cmake libgsl-dev pytest pytest-mpi | |
| - name: Build | |
| run: | | |
| python -m build | |
| - name: Install | |
| run: | | |
| python -m pip install --user dist/bigfile*whl | |
| - name: Build in place for tests | |
| run: | | |
| python setup.py build_ext --inplace | |
| - name: Build C | |
| run: | | |
| mkdir Cbuild | |
| cd Cbuild | |
| cmake -DCMAKE_INSTALL_PREFIX:PATH=install .. | |
| make install | |
| - name: C Unit tests | |
| run: | | |
| mpirun -n 4 Cbuild/utils/bigfile-iosim -n 1 -s 1024000 create test | |
| mpirun -n 4 Cbuild/utils/bigfile-iosim -n 1 -s 1024000 read test | |
| mpirun -n 4 Cbuild/utils/bigfile-iosim -n 4 -s 1024000 read test | |
| mpirun -n 4 Cbuild/utils/bigfile-iosim -A -n 1 -s 1024000 read test | |
| mpirun -n 4 Cbuild/utils/bigfile-iosim -A -n 4 -s 1024000 read test | |
| mpirun -n 8 Cbuild/utils/bigfile-iosim -A -n 2 -s 1024000 read test | |
| - name: Python Unit tests | |
| run: | | |
| python -m pytest --with-mpi | |
| mpirun -n 2 python -m pytest --with-mpi | |
| mpirun -n 4 --oversubscribe python -m pytest --with-mpi | |
| - name: Build Python dist | |
| if: matrix.os == 'ubuntu-latest' && startsWith(github.ref, 'refs/tags') | |
| run: | | |
| bash check_tag.sh "${GITHUB_REF##*/}" bigfile/version.py | |
| - name: Store the distribution packages | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.10' #Only do this once! | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/bigfile*.tar.gz | |
| publish-to-pypi: | |
| name: Publish to PyPI | |
| if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes | |
| needs: | |
| - build | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/bigfile | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - name: Download the source dist | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 |