Merge branch 'develop'

Author: diegoabt

.github/workflows/draft-pdf.yml

@@ -0,0 +1,20 @@
+name: Draft PDF
+on: [push]
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: joss
+          paper-path: publication/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v4
+        with:
+          name: paper
+          path: publication/paper.pdf

.gitignore

@@ -50,5 +50,12 @@ docs/source/tutorials/tutorial_outputs/
 outputs/
 
 doc/source/tutorials/.ipynb_checkpoints/
+
 /docs/source/tutorials/ACD_RD.ipynb
 /docs/source/tutorials/.ipynb_checkpoints/
+
+publication/template/--env
+
+publication/template/--user
+
+publication/template/--volume

docs/source/_static/full-logo.png

@@ -48,7 +48,7 @@
     "myst_nb",  # add Jupyter notebooks
     "sphinx.ext.napoleon",  # 'sphinxcontrib.napoleon' is deprecated  # Google style docs
     "sphinxcontrib.bibtex",
-    "sphinx_copybutton",  # adds a copy button to code blocks
+    "sphinx_copybutton" # adds a copy button to code blocks
 ]
 autodoc_default_options = {
     "members": True,  # when set to True, Sphinx will automatically document all members
@@ -74,7 +74,7 @@
 nb_execution_timeout = 1000  # This is the timeout for executing a notebook cell
 
 # -- Options for  sphinxcontrib extension ---------------------------------------
-bibtex_bibfiles = ["references.bib"]
+bibtex_bibfiles = ['references.bib']
 
 # -- Options for HTML evaluation -------------------------------------------------