Merge pull request #655 from remlapmot/v0-6-23

Use fixed version of mr.raps

Author: remlapmot

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: TwoSampleMR
 Title: Two Sample MR Functions and Interface to MRC Integrative
     Epidemiology Unit OpenGWAS Database
-Version: 0.6.22
+Version: 0.6.23
 Authors@R: c(
     person("Gibran", "Hemani", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0003-0920-1055")),
@@ -65,7 +65,7 @@ Remotes:
     gqi/MRMix,
     mrcieu/MRInstruments,
     MRPRESSO=rondolab/MR-PRESSO,
-    qingyuanzhao/mr.raps,
+    qingyuanzhao/mr.raps#17,
     WSpiller/RadialMR
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)

NEWS.md

@@ -1,3 +1,9 @@
+# TwoSampleMR v0.6.23
+
+(Release date 2025-10-31)
+
+* We now obtain **mr.raps** (version 0.4.3) from the open pull request which includes a fix. We will switch back to the default branch once that pull request is merged.
+
 # TwoSampleMR v0.6.22
 
 (Release date 2025-08-27)

vignettes/perform_mr.Rmd

@@ -520,7 +520,7 @@ res
 
 MR-RAPS comes with two main options: `over.dispersion` (whether the method should consider systematic pleiotropy) and `loss.function` (either `"l2"`, `"huber"`, or `"tukey"`). The latter two loss functions are robust to idiosyncratic pleiotropy. The default option is `over.dispersion = TRUE`, `loss.function = "huber"`, and `shrinkage = FALSE`. To change these options, modify the `parameters` argument of `mr()` by, for example,
 
-```{r eval=FALSE}
+```{r}
 res <-
   mr(
     dat,