Implement Pydra code-generators #2
Workflow file for this run
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| name: Checks | |
| on: | |
| pull_request: | |
| types: [opened, synchronize] | |
| branches: [ master, dev] | |
| merge_group: | |
| types: [checks_requested] | |
| branches: [master] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| generate-pydra: | |
| runs-on: ubuntu-latest | |
| env: | |
| QT_SELECT: qt6 | |
| SCCACHE_GHA_ENABLED: "true" | |
| SCCACHE_CACHE_SIZE: "2G" | |
| steps: | |
| - uses: actions/checkout@v1 | |
| with: | |
| submodules: true | |
| - name: Get latest version | |
| run: echo "MRTRIX3_VERSION=$(git fetch --tags && git describe --tags --abbrev=0)" >> $GITHUB_ENV | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install clang qt6-base-dev libglvnd-dev zlib1g-dev libfftw3-dev ninja-build python3-numpy libpng-dev | |
| - name: Run sccache-cache | |
| uses: mozilla-actions/sccache-action@v0.0.9 | |
| - name: Get CMake | |
| uses: lukka/get-cmake@latest | |
| with: | |
| cmakeVersion: '3.16.3' | |
| - name: Print CMake version | |
| run: cmake --version | |
| - name: Make installation dir | |
| run: | | |
| sudo mkdir -p /opt/mrtrix3 | |
| sudo chown $USER /opt/mrtrix3 | |
| - name: configure | |
| run: > | |
| cmake | |
| -B build | |
| -G Ninja | |
| -D CMAKE_BUILD_TYPE=Release | |
| -D MRTRIX_BUILD_TESTS=ON | |
| -D MRTRIX_STL_DEBUGGING=ON | |
| -D MRTRIX_WARNINGS_AS_ERRORS=ON | |
| -D CMAKE_C_COMPILER=clang | |
| -D CMAKE_CXX_COMPILER=clang++ | |
| -D CMAKE_INSTALL_PREFIX=/opt/mrtrix3 | |
| - name: Build MRtrix3 | |
| run: cmake --build build | |
| - name: Install MRtrix3 | |
| run: cmake --install build | |
| - name: Clone pydra-tasks-mrtrix3 | |
| run: git clone https://github.com/nipype/pydra-tasks-mrtrix3 | |
| - name: Install pydra-tasks-mrtrix3 and fileformats packages | |
| run: pip install -e ./pydra-tasks-mrtrix3[dev] -e ./pydra-tasks-mrtrix3/related-packages/fileformats -e ./pydra-tasks-mrtrix3/related-packages/fileformats-extras | |
| - name: Generate Pydra task packages | |
| run: python3 pydra-tasks-mrtrix3/generate.py /opt/mrtrix3/bin pydra-tasks-mrtrix3 3.1.0 | |
| - name: Generate Pydra code | |
| run: python3 -c "import pydra.tasks.mrtrix3.v3_1" | |