Version 1.7.0 #13
Workflow file for this run
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| name: Test Pipeline | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| release: | |
| types: [published] | |
| env: | |
| NXF_ANSI_LOG: false | |
| concurrency: | |
| group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}" | |
| cancel-in-progress: true | |
| jobs: | |
| test-ci: | |
| if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'msdllcpapers/dragon') }}" | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| NXF_VER: | |
| - '23.10.1' | |
| - 'latest-stable' | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v4 | |
| - | |
| name: Setup nextflow | |
| uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: ${{ matrix.NXF_VER }} | |
| - | |
| name: Disk space cleanup | |
| uses: jlumbroso/free-disk-space@v1.3.1 | |
| - | |
| name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker --IO.outdir ./results | |
| star-solo: | |
| if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'msdllcpapers/dragon') }}" | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v4 | |
| - | |
| name: Setup nextflow | |
| uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: '23.10.1' | |
| - | |
| name: Disk space cleanup | |
| uses: jlumbroso/free-disk-space@v1.3.1 | |
| - | |
| name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker --IO.outdir ./results --pipeline STARsolo |