update pkgdown to bs5

yuliasidi · yuliasidi · commit 4a981bf991d5 · 2026-01-08T20:03:52.000-05:00
remove covr vignette
diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,6 +1,9 @@
 destination: docs
 
-# url: 
+url: msdllcpapers.github.io/oncoPoS/
+
+template:
+  bootstrap: 5
 
 footer:
   structure:
@@ -29,8 +32,7 @@ articles:
 - title: Introduction
   contents:
   - pos_bayes_framework
-- title: Coverage and Testing
+- title: Testing
   contents:
-  - code-covr
   - testing-plan
 
diff --git a/vignettes/code-covr.Rmd b/vignettes/code-covr.Rmd
diff --git a/vignettes/pos_bayes_framework.Rmd b/vignettes/pos_bayes_framework.Rmd
@@ -18,7 +18,7 @@ knitr::opts_chunk$set(
 )
 ```
 
-```{r, include=FALSE}
+```{r, include=FALSE, eval = FALSE}
 manual <-devtools::build_manual(path = ".")
 manual <- basename(grep("--output=", manual$command, value = TRUE))
 file.rename(from = manual, to = "package_manual.pdf")

Original file line number	Diff line number	Diff line change
`@@ -18,7 +18,7 @@ knitr::opts_chunk$set(`
`18`	`18`	`)`
`19`	`19`	```
`20`	`20`
`21`		-```{r, include=FALSE}
	`21`	+```{r, include=FALSE, eval = FALSE}
`22`	`22`	`manual <-devtools::build_manual(path = ".")`
`23`	`23`	`manual <- basename(grep("--output=", manual$command, value = TRUE))`
`24`	`24`	`file.rename(from = manual, to = "package_manual.pdf")`