STRING and Wikipathways Nodes

[reductiveminded]

Description:
After uploading a gene counts matrix and corresponding metadata file, I performed DE analysis, then created a list of up and down scored genes. For each list I performed STRING and Wikipathways analysis to see which genes were connected / enriched pathways. For some reason every time I do this it returns 0 values. If I take the same list and perform the enrichment analysis online at the respective websites it shows me a totally different output (with many connections, that of which are highly connected)

[reductiveminded]

If I instead upload a gene list (from say another publication) it works totally fine. It seems to be only from the particular counts and metadata files I uploaded.

[u8sand]

Are you able to share the link to your playbook with us so we can investigate?

[reductiveminded]

https://playbook-workflow-builder.cloud/report/2537ac09-7b02-100a-40d9-20c47e4ec1d4

[reductiveminded]

Hello,
Is there any update regarding this yet? My final presentation is in 2 weeks and I am really hoping that the STRING outputs will work :)
Thanks!