Alignment rates too low #191
Description
For a RNA-seq (human) with over 45 million paired end reads i only get 7 million aligned. When I use an in house pipeline over 40 million reads align. Is this a known issue? Thanks!
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For a RNA-seq (human) with over 45 million paired end reads i only get 7 million aligned. When I use an in house pipeline over 40 million reads align. Is this a known issue? Thanks!