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v1.10.3 improved Enrichrgram functionality
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-102
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6 files changed

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‎clustergrammer.js‎

Lines changed: 1 addition & 1 deletion
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‎clustergrammer.node.js‎

Lines changed: 1 addition & 1 deletion
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‎js/Enrichrgram.js‎

Lines changed: 2 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -56,7 +56,7 @@ function run_ini_enrichr(inst_cgm, inst_name){
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// replace all instances of commas with new line
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var gene_list = group_string.replace(/, /g, '\n');
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var enrichr_info = {list: gene_list, description: 'clustergrammer group list' , popup: true};
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var enrichr_info = {list: gene_list, description: 'Clustergrammer gene-cluster list' , popup: true};
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// defined globally - will improve
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enrich(enrichr_info);
@@ -263,12 +263,10 @@ function Enrichr_request(inst_cgm){
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.attr('transform', 'translate(135, 0)')
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.on('click', function(){
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console.log('clicking ')
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// get gene list and send to Enrichr
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var gene_list = inst_cgm.params.network_data.row_nodes_names.join('\n');
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var enrichr_info = {list: gene_list, description: 'clustergrammer group list' , popup: true};
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var enrichr_info = {list: gene_list, description: 'Clustergrammer gene list' , popup: true};
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// defined globally - will improve
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enrich(enrichr_info);

‎package.json‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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{
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"name": "clustergrammer",
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"version": "v1.10.2",
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"version": "v1.10.3",
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"description": "This is a clustergram implemented in D3.js. I started from the example http://bost.ocks.org/mike/miserables/ and added the following features",
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"main": "clustergrammer.node.js",
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"scripts": {

‎src/main.js‎

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Original file line numberDiff line numberDiff line change
@@ -25,7 +25,7 @@ var awesomplete = require('awesomplete');
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require('!style!css!./d3.slider/d3.slider.css');
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require('!style!css!awesomplete/awesomplete.css');
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/* clustergrammer v1.10.2
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/* clustergrammer v1.10.3
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* Nick Fernandez, Ma'ayan Lab, Icahn School of Medicine at Mount Sinai
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* (c) 2016
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*/

‎webpack.config.js‎

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Original file line numberDiff line numberDiff line change
@@ -33,98 +33,98 @@ module.exports = [
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]
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}
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}
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// ,
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// {
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// entry: './src/main.js',
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// // devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
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// devtool: DEBUG ? 'cheap-module-source-map' : false,
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// target: 'web',
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// output: {
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// path: __dirname,
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// filename: 'clustergrammer.min.js',
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// libraryTarget: 'var',
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// library: 'Clustergrammer'
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// },
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// externals: {
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// 'jQuery': 'jQuery',
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// 'lodash': '_',
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// 'underscore': '_',
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// 'd3': 'd3'
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// },
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// plugins:[
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// new webpack.optimize.UglifyJsPlugin({compress: { warnings: false }})
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// ],
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// module: {
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// loaders: [
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// {
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// test: /\.js$/,
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// loader: 'babel',
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// query: {
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// presets: ['es2015']
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// }
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// }
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// ]
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// }
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// },
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// {
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// entry: './src/main.js',
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// // devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
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// devtool: DEBUG ? 'cheap-module-source-map' : false,
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// target: 'web',
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// output: {
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// path: __dirname,
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// filename: 'clustergrammer.node.js',
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// libraryTarget: 'commonjs2',
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// library: 'Clustergrammer'
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// },
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// externals: {
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// 'jQuery': 'jQuery',
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// 'lodash': '_',
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// 'underscore': '_',
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// 'd3': 'd3'
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// },
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// module: {
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// loaders: [
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// {
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// test: /\.js$/,
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// loader: 'babel',
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// query: {
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// presets: ['es2015']
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// }
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// }
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// ]
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// }
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// },
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// {
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// entry: './src/main.js',
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// // devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
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// devtool: DEBUG ? 'cheap-module-source-map' : false,
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// target: 'web',
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// output: {
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// path: __dirname,
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// filename: 'clustergrammer.node.min.js',
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// libraryTarget: 'commonjs2',
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// library: 'Clustergrammer'
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// },
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// externals: {
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// 'jQuery': 'jQuery',
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// 'lodash': '_',
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// 'underscore': '_',
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// 'd3': 'd3'
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// },
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// plugins:[
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// new webpack.optimize.UglifyJsPlugin({compress: { warnings: false }})
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// ],
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// module: {
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// loaders: [
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// {
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// test: /\.js$/,
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// loader: 'babel',
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// query: {
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// presets: ['es2015']
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// }
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// }
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// ]
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// }
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// }
36+
,
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{
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entry: './src/main.js',
39+
// devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
40+
devtool: DEBUG ? 'cheap-module-source-map' : false,
41+
target: 'web',
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output: {
43+
path: __dirname,
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filename: 'clustergrammer.min.js',
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libraryTarget: 'var',
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library: 'Clustergrammer'
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},
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externals: {
49+
'jQuery': 'jQuery',
50+
'lodash': '_',
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'underscore': '_',
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'd3': 'd3'
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},
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plugins:[
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new webpack.optimize.UglifyJsPlugin({compress: { warnings: false }})
56+
],
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module: {
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loaders: [
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{
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test: /\.js$/,
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loader: 'babel',
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query: {
63+
presets: ['es2015']
64+
}
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}
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]
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}
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},
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{
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entry: './src/main.js',
71+
// devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
72+
devtool: DEBUG ? 'cheap-module-source-map' : false,
73+
target: 'web',
74+
output: {
75+
path: __dirname,
76+
filename: 'clustergrammer.node.js',
77+
libraryTarget: 'commonjs2',
78+
library: 'Clustergrammer'
79+
},
80+
externals: {
81+
'jQuery': 'jQuery',
82+
'lodash': '_',
83+
'underscore': '_',
84+
'd3': 'd3'
85+
},
86+
module: {
87+
loaders: [
88+
{
89+
test: /\.js$/,
90+
loader: 'babel',
91+
query: {
92+
presets: ['es2015']
93+
}
94+
}
95+
]
96+
}
97+
},
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{
99+
entry: './src/main.js',
100+
// devtool: DEBUG ? 'cheap-module-eval-source-map' : false,
101+
devtool: DEBUG ? 'cheap-module-source-map' : false,
102+
target: 'web',
103+
output: {
104+
path: __dirname,
105+
filename: 'clustergrammer.node.min.js',
106+
libraryTarget: 'commonjs2',
107+
library: 'Clustergrammer'
108+
},
109+
externals: {
110+
'jQuery': 'jQuery',
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'lodash': '_',
112+
'underscore': '_',
113+
'd3': 'd3'
114+
},
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plugins:[
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new webpack.optimize.UglifyJsPlugin({compress: { warnings: false }})
117+
],
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module: {
119+
loaders: [
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{
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test: /\.js$/,
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loader: 'babel',
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query: {
124+
presets: ['es2015']
125+
}
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}
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]
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}
129+
}
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];

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