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‎script/process_markdown.ipynb‎

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" <td>The Undergraduate Student Internship Program p...</td>\n",
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" <td>Applications will be accepted from November 27...</td>\n",
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" <td>https://cfde-drc.s3.amazonaws.com/assets/img/h...</td>\n",
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" title \\\n",
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"0 Summer Research Program in Biomedical Big Data... \n",
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"1 2024 HuBMAP Undergraduate Student Internship P... \n",
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"2 Coursera Course: Big Data Science with the BD2... \n",
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"3 SenNet + HOA - Hacking the Human Vasculature i... \n",
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"4 GlyGen & CFDE Workshop Summer 2023 \n",
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" short_description \\\n",
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"0 This virtual symposium was hosted by the Ma’ay... \n",
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"1 The Undergraduate Student Internship Program p... \n",
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"2 In this course the LINCS DCC covers computatio... \n",
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"3 The goal of this competition is to segment blo... \n",
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"4 This workshop provides an opportunity to learn... \n",
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"\n",
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" description tags \\\n",
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"0 LINCS’ Summer Research Training Program in Bio... [\"training program\"] \n",
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"1 Applications will be accepted from November 27... [\"internship\"] \n",
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"2 In this course the LINCS DCC introduces the da... [\"course\"] \n",
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"3 The “SenNet + HOA - Hacking the Human Vasculat... [\"competition\"] \n",
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"4 The purpose of this workshop is to bring toget... [\"workshop\"] \n",
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"\n",
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" agenda featured active start_date \\\n",
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"\n",
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" end_date application_start \\\n",
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"0 2024-08-09T00:00:00-04:00 \n",
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"0 2024-02-01T00:00:00-05:00 \n",
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"1 2024-02-01T00:00:00-05:00 \n",
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" link \\\n",
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"0 https://labs.icahn.mssm.edu/maayanlab/summer-r... \n",
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"1 https://hubmapconsortium.org/internship-program/ \n",
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"2 https://www.coursera.org/learn/bd2k-lincs \n",
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"3 https://www.kaggle.com/competitions/blood-vess... \n",
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"4 https://wiki.glygen.org/GlyGen_CFDE_Workshop_S... \n",
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"\n",
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" image dcc carousel \\\n",
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"0 https://cfde-drc.s3.amazonaws.com/assets/img/l... LINCS False \n",
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"1 https://cfde-drc.s3.amazonaws.com/assets/img/h... HuBMAP False \n",
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"2 https://cfde-drc.s3.amazonaws.com/assets/img/l... LINCS False \n",
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"3 https://cfde-drc.s3.amazonaws.com/assets/img/b... SenNet False \n",
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"4 https://cfde-drc.s3.amazonaws.com/assets/img/g... GlyGen False \n",
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"\n",
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" cfde_specific flyer \n",
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"0 True \n",
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"2 False \n",
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"4 True "
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"outreach = pd.read_csv('data/outreach.tsv', sep=\"\\t\")\n",
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"outreach = outreach.fillna('')\n",
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"outreach.head()\n"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 36,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"'2024-05-20'"
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]
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},
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"execution_count": 36,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"outreach.loc[1, 'start_date'].split('T')[0]"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 32,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"np.int64(9)"
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]
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},
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"execution_count": 32,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"(outreach.end_date == '').sum()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 40,
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"metadata": {},
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"outputs": [],
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"source": [
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"for i, row in outreach.iterrows():\n",
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"\tyml = {\"layout\": \"../../layouts/Outreach.astro\"}\n",
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"\tdescription = ''\n",
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"\tfor k,v in row.items():\n",
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"\t\tif not v == '':\n",
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"\t\t\tif not k == 'description':\n",
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"\t\t\t\tif k == 'dcc':\n",
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"\t\t\t\t\tv = v.split(\"; \")\n",
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"\t\t\t\tyml[k] = v\n",
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"\t\t\telse:\n",
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"\t\t\t\tdescription = v\n",
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"\tdate = ''\n",
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"\tif \"start_date\" in yml:\n",
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"\t\tdate = yml['start_date'] \n",
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"\tif \"end_date\" in yml:\n",
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"\t\tdate = yml['end_date'] \n",
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"\n",
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"\tfilename = yml[\"title\"]\n",
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"\tif not date == '':\n",
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"\t\tfilename = \"%s (%s)\"%(yml['title'], date.split('T')[0])\n",
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"\tfilename = filename.replace(\"/\", \"-\")\n",
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"\twith open('out/outreach/%s.md'%filename, 'w') as o:\n",
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"\t\to.write('---\\n')\n",
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"\t\to.write(yaml.dump(yml))\n",
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"\t\to.write('---\\n')\n",
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"\t\to.write(description)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,

‎src/pages/outreach/2024 HuBMAP Undergraduate Student Internship Program (2024-08-16).md‎

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---
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active: true
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application_end: '2024-02-01T00:00:00-05:00'
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application_start: '2023-11-07T00:00:00-05:00'
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carousel: false
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cfde_specific: false
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dcc:
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- HuBMAP
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end_date: '2024-08-16T00:00:00-04:00'
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featured: false
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image: https://cfde-drc.s3.amazonaws.com/assets/img/hubmap_internship.png
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layout: ../../layouts/Outreach.astro
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link: https://hubmapconsortium.org/internship-program/
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short_description: "The Undergraduate Student Internship Program provides the opportunity\
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\ for undergraduate students from US colleges and universities to receive mentorship\
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\ and training from\_NIH Human Biomolecular Atlas Program (HuBMAP) labs over the\
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\ summer."
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start_date: '2024-05-20T00:00:00-04:00'
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tags: '["internship"]'
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title: 2024 HuBMAP Undergraduate Student Internship Program
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---
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Applications will be accepted from November 27, 2023 until February 1, 2024.<br /><br />Internship experiences can be computational or experimental. The lab descriptions below identify which experiences will be computational and which will be experimental. <br /><br />Applicants can indicate their preference for computational or experimental internships on the application.<br /> <br /> Questions? Email us at: [email protected]

‎src/pages/outreach/2024 SPARC FAIR Codeathon (2024-08-12).md‎

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---
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active: true
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application_end: '2024-07-27T00:00:00-04:00'
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application_start: '2024-06-27T00:00:00-04:00'
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carousel: false
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cfde_specific: false
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end_date: '2024-08-12T00:00:00-04:00'
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featured: false
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image: https://cfde-drc.s3.us-east-2.amazonaws.com/assets/img/codeathon_sparc.png
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layout: ../../layouts/Outreach.astro
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link: https://sparc.science/news-and-events/events/2024-sparc-fair-codeathon
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short_description: The SPARC Data and Resource Center (DRC), with funding from the
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National Institutes of Health, will host a cloud-based three-day codeathon.
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start_date: '2024-08-10T00:00:00-04:00'
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tags: '["competition"]'
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title: 2024 SPARC FAIR Codeathon
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---
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The SPARC Data and Resource Center (DRC), with funding from the National Institutes of Health, will host a cloud-based three-day codeathon.

‎src/pages/outreach/2025 Voice AI Symposium and Hackathon (2025-04-24).md‎

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---
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active: true
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carousel: false
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cfde_specific: false
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dcc:
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- Bridge2AI
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end_date: '2025-04-24T10:00:00-05:00'
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featured: false
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image: https://cfde-drc.s3.us-east-2.amazonaws.com/assets/img/b2ai-summer-2024.png
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layout: ../../layouts/Outreach.astro
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link: https://www.eventsquid.com/event.cfm?id=26215
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short_description: "The 2025 Bridge2AI \u2013 Voice Symposium and Hackathon is an\
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\ interactive conference that brings together scientists, ethicists, advocates,\
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\ patients, clinicians, technology experts and students, all with a shared passion\
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\ for the transformative potential of voice biomarkers in healthcare. "
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start_date: '2025-04-22T10:00:00-05:00'
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tags: '["hackathon", "symposium"]'
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title: 2025 Voice AI Symposium and Hackathon
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---
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The 2025 Bridge2AI – Voice Symposium and Hackathon is an interactive conference that brings together scientists, ethicists, advocates, patients, clinicians, technology experts and students, all with a shared passion for the transformative potential of voice biomarkers in healthcare.

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