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miguelgondumiguelgondu
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Verifies we can replicate the building of the notebook from a new conda env
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‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.PrismData.rst

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poli.core.util.proteins.rasp.inner\_rasp.PrismData
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poli.core.util.proteins.rasp.inner\_rasp.PrismData
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.. automodule:: poli.core.util.proteins.rasp.inner_rasp.PrismData
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.. rubric:: Classes
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.. autosummary::
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PrismData
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PrismParser
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VariantData
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.. rubric:: Exceptions
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.. autosummary::
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PrismFormatError
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PrismValueFail
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.. currentmodule:: poli.core.util.proteins.rasp.inner_rasp
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.. autodata:: PrismData

‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.cavity_model.rst

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poli.core.util.proteins.rasp.inner\_rasp.cavity\_model
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poli.core.util.proteins.rasp.inner\_rasp.cavity\_model
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.. rubric:: Classes
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.. autosummary::
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CavityModel
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DDGDataset
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DDGToTensor
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DownstreamModel
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ResidueEnvironment
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ResidueEnvironmentsDataset
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ToTensor
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.. currentmodule:: poli.core.util.proteins.rasp.inner_rasp
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.. autodata:: cavity_model

‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.helpers.rst

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poli.core.util.proteins.rasp.inner\_rasp.helpers
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.. autosummary::
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cavity_to_prism
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compute_pdb_combo_corrs
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ds_pred
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ds_train_val
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eval_loop
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fermi_transform
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get_ddg_dataloader
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get_seq_from_variant
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init_lin_weights
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inverse_fermi_transform
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populate_dfs_with_resenvs
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remove_disulfides
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train_loop
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train_step
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train_val_split_cavity
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train_val_split_ds
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.. currentmodule:: poli.core.util.proteins.rasp.inner_rasp
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.. autodata:: helpers

‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.rst

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poli.core.util.proteins.rasp.inner\_rasp
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.. rubric:: Modules
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:toctree:
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:recursive:
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poli.core.util.proteins.rasp.inner_rasp.PrismData
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poli.core.util.proteins.rasp.inner_rasp.cavity_model
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poli.core.util.proteins.rasp.inner_rasp.helpers
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poli.core.util.proteins.rasp.inner_rasp.run_pipeline
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poli.core.util.proteins.rasp.inner_rasp.visualization
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‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.run_pipeline.rst

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poli.core.util.proteins.rasp.inner\_rasp.run\_pipeline
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.. currentmodule:: poli.core.util.proteins.rasp.inner_rasp
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.. autodata:: run_pipeline

‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.inner_rasp.visualization.rst

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poli.core.util.proteins.rasp.inner\_rasp.visualization
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.. autosummary::
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category_back
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gnomAD_category
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hist_plot
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hist_plot_all
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homology_plot
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intvl_95
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learning_curve_cavity
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learning_curve_ds
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learning_curve_ds_with_errorbars
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loss_analysis
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make_heatmap
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make_scatter
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.. currentmodule:: poli.core.util.proteins.rasp.inner_rasp
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‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.load_models.rst

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load_cavity_and_downstream_models
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‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.rasp_interface.rst

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poli.core.util.proteins.rasp.rasp\_interface
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.. rubric:: Classes
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RaspInterface
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.. autodata:: rasp_interface

‎docs/poli-docs/_autosummary/poli.core.util.proteins.rasp.rst

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poli.core.util.proteins.rasp.inner_rasp
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‎docs/poli-docs/_autosummary/poli.core.util.proteins.rst

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