Reruns linting (#299)

Author: miguelgondu

examples/observers/adding_a_wandb_observer/wandb_observer.py

@@ -6,8 +6,8 @@
 """
 
 import numpy as np
-
 import wandb
+
 from poli.core.black_box_information import BlackBoxInformation
 from poli.core.util.abstract_observer import AbstractObserver
 

src/poli/objective_repository/rmf_landscape/__init__.py

@@ -1,10 +1,10 @@
 """Rough Mount Fuji (RMF) fitness landscapes w/ tunable ruggedness using Numpy.
-See J Neidhart, IG Szendro, J Krug 
+See J Neidhart, IG Szendro, J Krug
     Adaptation in Tunably Rugged Fitness Landscapes: The Rough Mount Fuji Model.
     Genetics 2014 .
-    DOI: https://doi.org/10.1534/genetics.114.167668 
-See Aita et al. 
-    Analysis of a local fitness landscape with a model of the rough Mt. Fuji-type landscape: Application to prolyl endopeptidase and thermolysin. 
+    DOI: https://doi.org/10.1534/genetics.114.167668
+See Aita et al.
+    Analysis of a local fitness landscape with a model of the rough Mt. Fuji-type landscape: Application to prolyl endopeptidase and thermolysin.
     Biopolymers 2000 .
     DOI: https://doi.org/10.1002/(SICI)1097-0282(200007)54:1<64::AID-BIP70>3.0.CO;2-R
 """

src/poli/objective_repository/rosetta_energy/README.md

@@ -5,7 +5,7 @@ Created at JHU by Sergey Lyskov and the PyRosetta Team.
 (C) Copyright remains with the Rosetta Commons Member Institutions.
 
 
-By using the `rosetta_energy` black-box you agree that you have read and are in compliance with the PyRosetta 
+By using the `rosetta_energy` black-box you agree that you have read and are in compliance with the PyRosetta
 license agreement.
 
 See LICENSE.PyRosetta.md or email [email protected].

src/poli/objective_repository/rosetta_energy/register.py

@@ -5,13 +5,13 @@
 Rosetta is a black box that starts
 with one wildtype pdb file, and assesses the
 stability of a variant.
-Two general running-modes are available: 
+Two general running-modes are available:
 i) fast prediction with MinMover and scoring function -- set relax=False, pack=False
 ii) default protocol prediction with pack and relax algorithm -- default .
 
-[1] Chaudhury, Sidhartha, Sergey Lyskov, and Jeffrey J. Gray. 
-"PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta." 
-Bioinformatics 26.5 (2010): 689-691. https://doi.org/10.1093/bioinformatics/btq007 
+[1] Chaudhury, Sidhartha, Sergey Lyskov, and Jeffrey J. Gray.
+"PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta."
+Bioinformatics 26.5 (2010): 689-691. https://doi.org/10.1093/bioinformatics/btq007
 
 """