GLOBE/test_np.yaml at main · MalikJordan/GLOBE · GitHub

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base_element: n                         # mmol N / m^3

tracers:
  no3:
    long_name: nitrate
    type: inorganic
    composition:
      n: 0.003                          # mmol N / m^3
    parameters:
      temp_limited: False
  phyto1:
    long_name: diatoms
    type: phytoplankton
    composition:                        # element : initial concentration
      n: 0.003                          # mmol N / m^3
    parameters:
      temp_limited: False
      nutrient_limitation:
        type: external
        nutrients: ["no3"]

parameters:
  environment:
    base_temp: 20.0
    summer_mld: 10.0
    winter_mld: 40.0
    summer_salt: 36.5
    winter_salt: 37.0
    summer_sun: 120.0
    winter_sun: 10.0
    summer_temp: 15.0
    winter_temp: 15.0
    summer_wind: 2.0
    winter_wind: 6.0
    PAR_frac: 0.4
  simulation:
    latitude: 45.0
    num_days: 180
    timestep: 360.0
  water_column:
    column_depth: 10.0
    num_layers: 1

reactions:
  - type: mortality
    consumed:
      phyto1: [n]
    produced:
      no3: [n]
    parameters:
      mortality_rate: [0.05,0.0]
  - type: uptake
    consumed:
      no3: [n]
    produced:
      phyto1: [n]
    parameters:
      nutrient_limitation: variable
      half_sat_nutrient: 0.1
      light_limitation: 1.0
      max_photo_rate: 1.4