Possible to use the 'plot_mass_spectra()' function with DIA-NN?

[MarcIsak]

Hi,

I am running AlphaViz in Python, and I wonder if there is a way to use the plot_mass_spectra function on a diaPASEF dataset analyzed with DIA-NN? When I read the documentation, it seems like this function is compatible with datasets analyzed by MaxQuant but it would be great if it could also work with DIA-NN.

Best regards,

Marc

[jalew188]

We are currently working on this, check https://github.com/MannLabs/alphaviz/blob/peptdeep_latest/nbs/tutorial_DIANN_alphabase.ipynb