confocal data workflow/Golgi data reproduce

[linzhangTuesday]

hi thanks a lot for the very cool package. trying to learn about the confocal workflow for Golgi morphologies, was able to locate the input data on zenodo (https://zenodo.org/records/17162225), but no code either on github or zenodo, except the config_Golgi.yml file under https://github.com/MannLabs/scPortrait_manuscript

could you please kindly direct me to any example code, or tutorials? similar to what posted for the Xenium ovarian cancer dataset, from handling input data, to reproduce some of the paper analysis would be highly appreciated.

thanks a lot.

[sophiamaedler]

@linzhangTuesday sorry for this not being directly found. I'll try and push something as soon as possible and ping you when its done. It'll probably be some time next week though.

[linzhangTuesday]

thank you so much @sophiamaedler that will be highly appreciated