Update outdated dependencies (SPEC-0) (#510)

SPEC-0 update and version bump

---------

Co-authored-by: Marcello Sega <m.sega@ucl.ac.uk>
Co-authored-by: spec0-bot <spec0-bot@users.noreply.github.com>

Author: 3 people

pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pytim"
-version = "1.0.4"  # Loaded from pytim/version.py in setup.py
+version = "1.0.5"  # Loaded from pytim/version.py in setup.py
 description = "Python Tool for Interfacial Molecules Analysis"
 readme = "README.rst"
 requires-python = ">=3.10"
@@ -36,17 +36,17 @@ classifiers = [
 
 dependencies = [
   "numpy>=2.1.3",
-  "cython>=3.0.1",
+  "cython>=3.0.8",
   "gsd>3.0.0",
   "MDAnalysis>=2.8.0",
-  "scipy>=1.11.3",
+  "scipy>=1.12.0",
   "setuptools",
-  "PyWavelets>=1.5.0",
+  "PyWavelets>=1.8.0",
   "scikit-image>=0.24.0",
-  "sphinx>=7.2.3",
+  "sphinx>=7.3.0",
   "matplotlib",
   "pytest",
-  "dask>=2023.9.0"
+  "dask>=2024.1.0"
 ]
 
 [project.optional-dependencies]

pytim/version.py

@@ -1 +1 @@
-__version__ = '1.0.4'
+__version__ = '1.0.5'

requirements.txt

@@ -1,11 +1,11 @@
-cython>=3.0.1
+cython>=3.0.8
 numpy>=2.1.3
-scipy>=1.11.3
+scipy>=1.12.0
 gsd>3.0.0
 setuptools
 MDAnalysis>=2.8.0
-PyWavelets>=1.5.0
+PyWavelets>=1.8.0
 scikit-image>=0.24.0
-sphinx>=7.2.3
+sphinx>=7.3.0
 matplotlib>=3.9.2
-dask>=2023.9.0
+dask>=2024.1.0