Stack_To_Slices.ijm

/*
This macro processes a single open image. The individual z-slices are being saved to disk in a folder that is to be specified.


MIT License
Written by Marie Held {mheldb@liverpool.ac.uk}, Image Analyst Liverpool CCI (https://cci.liverpool.ac.uk/).
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/


#@ File (label = "Output directory", style = "directory") output

stackToSlices()

function stackToSlices(){
	title = getTitle();
	title_without_extension = file_name_remove_extension(title); 
	getDimensions(width, height, channels, slices, frames);	 
	//loop through z planes
	for(i=1; i<=slices; i++){
		print("loop");
		selectWindow(title);
		run("Duplicate...", "duplicate slices=" + i );
		saveAs("Tiff", output + File.separator+ title_without_extension + "_Z" + i);
		close();
	}
}

function file_name_remove_extension(file_name){
	dotIndex = lastIndexOf(file_name, "." ); 
	file_name_without_extension = substring(file_name, 0, dotIndex );
	//print( "Name without extension: " + file_name_without_extension );
	return file_name_without_extension;
}