openbis.ttl

@prefix : <http://w3id.org/matolab/openbis/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix vann: <http://purl.org/vocab/vann/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@base <http://w3id.org/matolab/openbis/> .

<http://w3id.org/matolab/openbis> rdf:type owl:Ontology ;
                                   owl:versionIRI <http://w3id.org/matolab/openbis/1.0.0> ;
                                   dc:contributor "Andre Valdestilhas (Bundesanstalt für Materalprüfung und -forschung BAM)"@en ,
                                                  "Mariam Rizkallah (Fraunhofer IFAM)"@en ,
                                                  "Rasmus Antons (Fraunhofer IWM)"@en ,
                                                  "Thomas Hanke (Fraunhofer IWM)"@en ;
                                   dcterms:bibliographicCitation "obis: MatoLab openbis ontology. Version 1.0.0, http://w3id.org/matolab/ontology/" ;
                                   dcterms:created "2024-01-15" ;
                                   dcterms:creator "Matolab OpenBISmatic Team"@en ;
                                   dcterms:description "A simple ontology with the scope to represent the database items of an OpenBIS instance semantically."@en ;
                                   dcterms:license <http://creativecommons.org/licenses/by/4.0/> ;
                                   dcterms:title "Matolab OpenBIS Ontology (OpenBISOnt)"@en ;
                                   vann:preferredNamespacePrefix "obis"@en ;
                                   vann:preferredNamespaceUri "http://w3id.org/matolab/openbis" ;
                                   rdfs:comment "This is a simple Ontology expaining the data model of OpenBIS."@en ;
                                   owl:versionInfo "1.0.0"@en .

#################################################################
#    Annotation properties
#################################################################

###  http://purl.org/dc/elements/1.1/contributor
dc:contributor rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/bibliographicCitation
dcterms:bibliographicCitation rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/created
dcterms:created rdf:type owl:AnnotationProperty ;
                :openbis_json_key "registrationDate" .


###  http://purl.org/dc/terms/creator
dcterms:creator rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/description
dcterms:description rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/license
dcterms:license rdf:type owl:AnnotationProperty .


###  http://purl.org/dc/terms/title
dcterms:title rdf:type owl:AnnotationProperty .


###  http://purl.org/vocab/vann/preferredNamespacePrefix
vann:preferredNamespacePrefix rdf:type owl:AnnotationProperty .


###  http://purl.org/vocab/vann/preferredNamespaceUri
vann:preferredNamespaceUri rdf:type owl:AnnotationProperty .


###  http://w3id.org/matolab/openbis/code
:code rdf:type owl:AnnotationProperty ;
      :openbis_json_key "code" ;
      rdfs:range xsd:string .


###  http://w3id.org/matolab/openbis/openbis_json_key
:openbis_json_key rdf:type owl:AnnotationProperty ;
                  rdfs:range xsd:string .


###  http://www.w3.org/2000/01/rdf-schema#comment
rdfs:comment :openbis_json_key "description" .


###  http://www.w3.org/2000/01/rdf-schema#label
rdfs:label :openbis_json_key "label" .


###  http://www.w3.org/2004/02/skos/core#altLabel
skos:altLabel rdf:type owl:AnnotationProperty .


###  http://www.w3.org/2004/02/skos/core#definition
skos:definition rdf:type owl:AnnotationProperty .


#################################################################
#    Datatypes
#################################################################

###  https://www.w3.org/2000/01/rdf-schema#Resource
<https://www.w3.org/2000/01/rdf-schema#Resource> rdf:type rdfs:Datatype .


#################################################################
#    Object Properties
#################################################################

###  http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:ObjectProperty ;
           rdfs:domain prov:Entity ;
           rdfs:range prov:Agent ;
           :openbis_json_key "registrator" .


###  http://purl.org/dc/terms/contributor
dcterms:contributor rdf:type owl:ObjectProperty ;
                    rdfs:subPropertyOf owl:topObjectProperty ;
                    rdfs:domain prov:Entity ;
                    rdfs:range prov:Agent ;
                    :openbis_json_key "modifier" .


###  http://w3id.org/matolab/openbis/dataset_permid
:dataset_permid rdf:type owl:ObjectProperty ;
                rdfs:domain <http://www.w3.org/ns/dcat#Distribution> ;
                rdfs:range :PermanentIdentifier ;
                :openbis_json_key "dataSetId" ;
                rdfs:label "dataset permId" .


###  http://w3id.org/matolab/openbis/has_child
:has_child rdf:type owl:ObjectProperty ;
           owl:inverseOf :has_parent ;
           rdfs:domain :Object ;
           rdfs:range :Object ;
           :openbis_json_key "children" ;
           rdfs:label "has child"@en ;
           skos:definition "Relation towards the child of an Object." .


###  http://w3id.org/matolab/openbis/has_identifier
:has_identifier rdf:type owl:ObjectProperty ;
                owl:inverseOf :is_identifier_of ;
                rdfs:domain prov:Entity ;
                rdfs:range :Identifier ;
                :openbis_json_key "filePath" ,
                                  "permId" ;
                rdfs:label "has identifier"@en ;
                skos:definition "Relation pointing to an Identifier concretizing the Identity of the entity further." .


###  http://w3id.org/matolab/openbis/has_parent
:has_parent rdf:type owl:ObjectProperty ;
            rdfs:domain :Object ;
            rdfs:range :Object ;
            :openbis_json_key "parents" ;
            rdfs:label "has parent"@en ;
            skos:definition "Inverse of has_child." .


###  http://w3id.org/matolab/openbis/has_tag
:has_tag rdf:type owl:ObjectProperty ;
         owl:inverseOf :is_tag_of ;
         rdfs:domain prov:Entity ;
         rdfs:range :Identifier ;
         :openbis_json_key "tags" ;
         rdfs:label "has tag"@en ;
         skos:definition "Relation pointing to an Tag concretizing the Category of the entity." .


###  http://w3id.org/matolab/openbis/is_identifier_of
:is_identifier_of rdf:type owl:ObjectProperty ;
                  rdfs:domain :Identifier ;
                  rdfs:range prov:Entity ;
                  rdfs:label "is identifier of"@en ;
                  skos:definition "Inverse of has_identifier." .


###  http://w3id.org/matolab/openbis/is_tag_of
:is_tag_of rdf:type owl:ObjectProperty ;
           rdfs:domain :Identifier ;
           rdfs:range prov:Entity ;
           rdfs:label "is tag of"@en ;
           skos:definition "Inverse of has_tag." .


###  http://w3id.org/matolab/openbis/relates_to
:relates_to rdf:type owl:ObjectProperty ,
                     owl:SymmetricProperty ;
            rdfs:domain :Collection ,
                        :DataStore ,
                        :Object ,
                        :Project ,
                        :Space ,
                        <http://www.w3.org/ns/dcat#Dataset> ;
            rdfs:range :Collection ,
                       :Object ,
                       :Project ,
                       :Space ;
            :openbis_json_key "attachments" ,
                              "components" ,
                              "dataSets" ,
                              "dataStore" ,
                              "experiment" ,
                              "experiments" ,
                              "files" ,
                              "project" ,
                              "projects" ,
                              "samples" ,
                              "space" ;
            rdfs:label "relates to"@en ;
            skos:definition "A general relation of OpenBIS instance marking them related to each other." .


###  http://www.w3.org/ns/dcat#distribution
<http://www.w3.org/ns/dcat#distribution> rdf:type owl:ObjectProperty ;
                                         rdfs:domain <http://www.w3.org/ns/dcat#Dataset> ;
                                         rdfs:range <http://www.w3.org/ns/dcat#Distribution> ;
                                         rdfs:label "distribution" .


#################################################################
#    Data properties
#################################################################

###  http://w3id.org/matolab/openbis/file_path
:file_path rdf:type owl:DatatypeProperty ;
           rdfs:domain <http://www.w3.org/ns/dcat#Distribution> ;
           rdfs:range xsd:string ;
           :openbis_json_key "path" .


###  http://www.w3.org/ns/dcat#byteSize
<http://www.w3.org/ns/dcat#byteSize> rdf:type owl:DatatypeProperty ;
                                     rdfs:domain <http://www.w3.org/ns/dcat#Distribution> ;
                                     rdfs:range xsd:nonNegativeInteger ;
                                     :openbis_json_key "fileLength" .


###  http://www.w3.org/ns/dcat#downloadURL
<http://www.w3.org/ns/dcat#downloadURL> rdf:type owl:DatatypeProperty ;
                                        rdfs:subPropertyOf owl:topDataProperty ;
                                        rdfs:domain <http://www.w3.org/ns/dcat#Distribution> ;
                                        rdfs:range <https://www.w3.org/2000/01/rdf-schema#Resource> .


###  http://www.w3.org/ns/dcat#endpointURL
<http://www.w3.org/ns/dcat#endpointURL> rdf:type owl:DatatypeProperty ;
                                        rdfs:subPropertyOf owl:topDataProperty ;
                                        rdfs:domain <http://www.w3.org/ns/dcat#DataService> ;
                                        rdfs:range <https://www.w3.org/2000/01/rdf-schema#Resource> ;
                                        :openbis_json_key "downloadUrl" .


#################################################################
#    Classes
#################################################################

###  http://w3id.org/matolab/openbis/Collection
:Collection rdf:type owl:Class ;
            rdfs:subClassOf prov:Entity ;
            :openbis_json_key "as.dto.experiment.Experiment" ;
            rdfs:label "Collection" ;
            skos:altLabel "Experiment" ;
            skos:definition "An OpenBIS Collection of Objects and DataSets." .


###  http://w3id.org/matolab/openbis/DataStore
:DataStore rdf:type owl:Class ;
           rdfs:subClassOf <http://www.w3.org/ns/dcat#DataService> ;
           :openbis_json_key "as.dto.datastore.DataStore" ;
           rdfs:label "OpenBIS Data Store" ;
           skos:definition "A openBIS database service hosting files." .


###  http://w3id.org/matolab/openbis/Identifier
:Identifier rdf:type owl:Class ;
            rdfs:subClassOf prov:Entity ;
            :openbis_json_key "as.dto.experiment.id.ExperimentIdentifier" ,
                              "as.dto.project.id.ProjectIdentifier" ,
                              "as.dto.sample.id.SampleIdentifier" ;
            rdfs:label "Identifier" ;
            skos:definition "A String as additional Identifier." .


###  http://w3id.org/matolab/openbis/Object
:Object rdf:type owl:Class ;
        rdfs:subClassOf prov:Entity ;
        :openbis_json_key "as.dto.sample.Sample" ;
        rdfs:label "Object" ;
        skos:altLabel "Sample" ;
        skos:definition "An OpenBIS entity of an object." .


###  http://w3id.org/matolab/openbis/PermanentIdentifier
:PermanentIdentifier rdf:type owl:Class ;
                     rdfs:subClassOf :Identifier ;
                     :openbis_json_key "as.dto.dataset.id.DataSetPermId" ,
                                       "as.dto.entitytype.id.EntityTypePermId" ,
                                       "as.dto.experiment.id.ExperimentPermId" ,
                                       "as.dto.person.id.PersonPermId" ,
                                       "as.dto.project.id.ProjectPermId" ,
                                       "as.dto.sample.id.SamplePermId" ,
                                       "as.dto.space.id.SpacePermId" ;
                     rdfs:label "Permanent Identifier" ;
                     skos:definition "A additional String given by the OpenBIS data storage which will never be changed." .


###  http://w3id.org/matolab/openbis/Project
:Project rdf:type owl:Class ;
         rdfs:subClassOf prov:Entity ;
         :openbis_json_key "as.dto.project.Project" ;
         rdfs:label "Project" ;
         skos:definition "An OpenBIS Project." .


###  http://w3id.org/matolab/openbis/Space
:Space rdf:type owl:Class ;
       rdfs:subClassOf prov:Entity ;
       :openbis_json_key "as.dto.space.Space" ;
       rdfs:label "Space" ;
       skos:definition "An OpenBIS Space." .


###  http://w3id.org/matolab/openbis/User
:User rdf:type owl:Class ;
      owl:equivalentClass prov:Agent ;
      rdfs:subClassOf foaf:Person ;
      :openbis_json_key "as.dto.person.Person" ;
      rdfs:label "User" ;
      skos:definition "An named openBIS user." .


###  http://www.w3.org/ns/dcat#DataService
<http://www.w3.org/ns/dcat#DataService> rdf:type owl:Class ;
                                        rdfs:subClassOf prov:SoftwareAgent ;
                                        rdfs:label "Data Service" .


###  http://www.w3.org/ns/dcat#Dataset
<http://www.w3.org/ns/dcat#Dataset> rdf:type owl:Class ;
                                    rdfs:subClassOf prov:Entity ;
                                    :openbis_json_key "as.dto.dataset.DataSet" ;
                                    rdfs:label "Data Set" ;
                                    skos:definition "An folder where data files are stored. A data set has user-defined properties." .


###  http://www.w3.org/ns/dcat#Distribution
<http://www.w3.org/ns/dcat#Distribution> rdf:type owl:Class ;
                                         rdfs:subClassOf prov:Entity ;
                                         :openbis_json_key "dss.dto.datasetfile.DataSetFile" ;
                                         rdfs:label "Distribution"@en .


###  http://www.w3.org/ns/prov#Agent
prov:Agent rdf:type owl:Class .


###  http://www.w3.org/ns/prov#Entity
prov:Entity rdf:type owl:Class .


###  http://www.w3.org/ns/prov#SoftwareAgent
prov:SoftwareAgent rdf:type owl:Class .


###  http://xmlns.com/foaf/0.1/Person
foaf:Person rdf:type owl:Class .


#################################################################
#    Individuals
#################################################################

###  http://w3id.org/matolab/openbis/GeneralProtocols
:GeneralProtocols rdf:type owl:NamedIndividual ,
                           :Collection ;
                  rdfs:label "General Protocols Collection, a default OpenBIS collection to contain the lab proceedures generally used in the lab." .


###  http://w3id.org/matolab/openbis/Materials
:Materials rdf:type owl:NamedIndividual ,
                    :Space ;
           rdfs:label "Materials Space, a default OpenBIS space for material entities." .


###  http://w3id.org/matolab/openbis/Methods
:Methods rdf:type owl:NamedIndividual ,
                  :Space ;
         rdfs:label "Methods Space, a default OpenBIS space for methods and proceedures." .


###  http://w3id.org/matolab/openbis/Protocols
:Protocols rdf:type owl:NamedIndividual ,
                    :Project ;
           rdfs:label "Protocols Project, a default OpenBIS project for proceedures." .


#################################################################
#    Annotations
#################################################################

dcterms:modified :openbis_json_key "modificationDate" .


rdf:type :openbis_json_key "type" .


rdf:value :openbis_json_key "identifier" ,
                            "permId" .


owl:Class :openbis_json_key "as.dto.dataset.DataSetType" ,
                            "as.dto.experiment.ExperimentType" ,
                            "as.dto.sample.SampleType" .


owl:ObjectProperty :openbis_json_key "as.dto.property.PropertyType" .


foaf:family_name :openbis_json_key "lastName" .


foaf:givenname :openbis_json_key "firstName" .


foaf:mbox :openbis_json_key "email" .


#################################################################
#    General axioms
#################################################################

[ rdf:type owl:AllDisjointClasses ;
  owl:members ( :Collection
                :Identifier
                :Object
                :Project
                :Space
                :User
              )
] .


###  Generated by the OWL API (version 4.5.26.2023-07-17T20:34:13Z) https://github.com/owlcs/owlapi