Update scripts and dockerfile

scripts now provide help and show their version.
They also show useful environment variables set

Dockerfile has been update to use a newer Asymptote which is needed
in generating the reference PDFs

mathics.sqlite adds

sections from Mark S Gockenbach's Tutorial for Partial Differential
Equations: Analytical and Numerical Methods

Author: rocky

docker/Dockerfile

@@ -22,7 +22,7 @@ RUN apt-get install -qq apt-utils
 # npm pulls in nodejs, but we'll be explicit.
 
 # Install lots of packages
-RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps asymptote w3m latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
 
 RUN pip install --no-cache-dir -r requirements.txt
 COPY requirements-mathicsscript.txt ./
@@ -32,15 +32,19 @@ RUN pip install --no-cache-dir -r requirements-mathicsscript.txt
 # Mathics core #
 ################
 RUN pip install "Mathics3[full]>=4.0.0"
+# RUN pip install git+git://github.com/mathics/Mathics.git#egg=Mathics3[full]
 
-# We need newer versions of Asymptote and GhostScript for bulding the PDF
-COPY ubuntu-bin/gs /usr/local/bin/
-
-# We would need to copy over a *full asy distribution*
-# COPY ubuntu-bin/asy /usr/local/bin/
+# RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq librsvg2-bin python3-cson python3-pyqt5 python3-pyqt5.qtsvg
 
-# For now, until we package TeX sources skip building PDF and just copy it
-# to the place entrypoint.sh expects it.
+# We need newer versions of Asymptote and GhostScript for bulding the PDF
+# COPY ubuntu-dpkg/*.deb /tmp/
+# RUN dpkg --install /tmp/libgc1_8.0.4-3_amd64.deb /tmp/libgsl25_2.6+dfsg-2_amd64.deb /tmp/libgslcblas0_2.6+dfsg-2_amd64.deb
+# RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq freeglut3 libfftw3-double3 libglew2.1 libsigsegv2 ghostscript imagemagick texlive-pstricks
+# RUN dpkg --install /tmp/asymptote_2.70+ds-2_amd64.deb
+# COPY ubuntu-bin/gs /usr/local/bin/
+
+# Skip building PDF and just copy it to the place entrypoint.sh
+# expects it.
 COPY tex-images/mathics.pdf /usr/src/app/data/mathics.pdf
 
 #####################
@@ -63,8 +67,6 @@ RUN ${PYTHON} -m nltk.downloader wordnet omw
 RUN ${PYTHON} -m pip install 'ipython<8.0,>=7.23.1'
 RUN ${PYTHON} -m pip install mathicsscript[full]
 
-RUN ${PYTHON} -m nltk.downloader wordnet omw
-RUN ${PYTHON} -m spacy download en
 
 ##################
 # Mathics Django #

docker/Dockerfile-dev

@@ -22,7 +22,7 @@ RUN apt-get install -qq apt-utils
 # npm pulls in nodejs, but we'll be explicit.
 
 # Install lots of packages
-RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps asymptote w3m latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
 
 RUN pip install --no-cache-dir -r requirements.txt
 COPY requirements-mathicsscript.txt ./
@@ -34,7 +34,20 @@ RUN pip install --no-cache-dir -r requirements-mathicsscript.txt
 # RUN pip install "Mathics3[full]>=4.0.0"
 RUN pip install git+git://github.com/mathics/Mathics.git#egg=Mathics3[full]
 
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq librsvg2-bin python3-cson python3-pyqt5 python3-pyqt5.qtsvg
+
+# We need newer versions of Asymptote and GhostScript for bulding the PDF
+COPY ubuntu-dpkg/*.deb /tmp/
+RUN dpkg --install /tmp/libgc1_8.0.4-3_amd64.deb /tmp/libgsl25_2.6+dfsg-2_amd64.deb /tmp/libgslcblas0_2.6+dfsg-2_amd64.deb
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq freeglut3 libfftw3-double3 libglew2.1 libsigsegv2 ghostscript imagemagick texlive-pstricks
+RUN dpkg --install /tmp/asymptote_2.70+ds-2_amd64.deb
+COPY ubuntu-bin/gs /usr/local/bin/
+
 RUN git clone https://github.com/mathics/Mathics.git
+ENV DATA_DIR=/usr/src/app/Mathics/mathics/doc/tex/
+ENV DOC_USER_TEX_DATA_PATH=/usr/src/app/Mathics/mathics/doc/tex/doc_tex_data.pcl
+ENV DOC_USER_HTML_DATA_PATH=/usr/src/app/Mathics/mathics/doc/tex/doc_html_data.pcl
+
 COPY tex-images/*.pdf Mathics/mathics/doc/tex/
 ENV DOC_LATEX_FILE=/usr/src/app/Mathics/mathics/doc/tex/documentation.tex
 RUN (cd Mathics && ${PYTHON} ./setup.py develop)
@@ -55,6 +68,11 @@ RUN ${PYTHON} -m nltk.downloader wordnet omw
 # Mathicsscript  #
 ##################
 
+
+# prompt toolkit needs an IPython that is newer than what got
+# implicitly installed above
+RUN ${PYTHON} -m pip install 'ipython<8.0,>=7.23.1'
+
 RUN ${PYTHON} -m pip install -e git://github.com/Mathics3/mathicsscript#egg=mathicsscript[full]
 RUN (cd src/mathicsscript && make)
 
@@ -65,7 +83,7 @@ RUN ${PYTHON} -m pip install -e git://github.com/Mathics3/mathics-django#egg=Mat
 
 RUN (cd src/mathics-django && npm install && make)
 RUN (cd src/mathics-django && ${PYTHON} mathics_django/docpipeline.py -o)
-RUN mkdir -p /usr/src/app/.local/var/mathics && cp -v /root/.local/var/mathics/doc_data.pcl /usr/src/app/.local/var/mathics/doc_data.pcl
+RUN mkdir -p /usr/src/app/.local/var/mathics && cp -v $DOC_USER_HTML_DATA_PATH /usr/src/app/.local/var/mathics/doc_data.pcl
 
 ##################
 # debug stuff    #

docker/Dockerfile-dev+debug

@@ -22,7 +22,7 @@ RUN apt-get install -qq apt-utils
 # npm pulls in nodejs, but we'll be explicit.
 
 # Install lots of packages
-RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps asymptote w3m latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq liblapack-dev llvm-12 llvm-12-dev gfortran maria libmysqlclient-dev sqlite3 python3-pip python3-setuptools git python3-numpy python3-matplotlib python-matplotlib-data x11-apps latexmk texlive-xetex lmodern texlive-latex-extra texlive-fonts-recommended nodejs npm xserver-xorg-video-all libgl1-mesa-glx libgl1-mesa-dri mesa-utils evince
 
 RUN pip install --no-cache-dir -r requirements.txt
 COPY requirements-mathicsscript.txt ./
@@ -34,7 +34,20 @@ RUN pip install --no-cache-dir -r requirements-mathicsscript.txt
 # RUN pip install "Mathics3[full]>=4.0.0"
 RUN pip install git+git://github.com/mathics/Mathics.git#egg=Mathics3[full]
 
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq librsvg2-bin python3-cson python3-pyqt5 python3-pyqt5.qtsvg
+
+# We need newer versions of Asymptote and GhostScript for bulding the PDF
+COPY ubuntu-dpkg/*.deb /tmp/
+RUN dpkg --install /tmp/libgc1_8.0.4-3_amd64.deb /tmp/libgsl25_2.6+dfsg-2_amd64.deb /tmp/libgslcblas0_2.6+dfsg-2_amd64.deb
+RUN DEBIAN_FRONTEND="noninteractive" TZ="US/Eastern" apt-get install -qq freeglut3 libfftw3-double3 libglew2.1 libsigsegv2 ghostscript imagemagick texlive-pstricks
+RUN dpkg --install /tmp/asymptote_2.70+ds-2_amd64.deb
+COPY ubuntu-bin/gs /usr/local/bin/
+
 RUN git clone https://github.com/mathics/Mathics.git
+ENV DATA_DIR=/usr/src/app/Mathics/mathics/doc/tex/
+ENV DOC_USER_TEX_DATA_PATH=/usr/src/app/Mathics/mathics/doc/tex/doc_tex_data.pcl
+ENV DOC_USER_HTML_DATA_PATH=/usr/src/app/Mathics/mathics/doc/tex/doc_html_data.pcl
+
 COPY tex-images/*.pdf Mathics/mathics/doc/tex/
 ENV DOC_LATEX_FILE=/usr/src/app/Mathics/mathics/doc/tex/documentation.tex
 RUN (cd Mathics && ${PYTHON} ./setup.py develop)
@@ -55,6 +68,10 @@ RUN ${PYTHON} -m nltk.downloader wordnet omw
 # Mathicsscript  #
 ##################
 
+# prompt toolkit needs an IPython that is newer than what got
+# implicitly installed above
+RUN ${PYTHON} -m pip install 'ipython<8.0,>=7.23.1'
+
 RUN ${PYTHON} -m pip install -e git://github.com/Mathics3/mathicsscript#egg=mathicsscript[full]
 RUN (cd src/mathicsscript && make)
 
@@ -65,7 +82,7 @@ RUN ${PYTHON} -m pip install -e git://github.com/Mathics3/mathics-django#egg=Mat
 
 RUN (cd src/mathics-django && npm install && make)
 RUN (cd src/mathics-django && ${PYTHON} mathics_django/docpipeline.py -o)
-RUN mkdir -p /usr/src/app/.local/var/mathics && cp -v /root/.local/var/mathics/doc_data.pcl /usr/src/app/.local/var/mathics/doc_data.pcl
+RUN mkdir -p /usr/src/app/.local/var/mathics && cp -v $DOC_USER_HTML_DATA_PATH /usr/src/app/.local/var/mathics/doc_data.pcl
 
 ##################
 # debug stuff    #