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Some users do not want to automatically crop PNG sequences, added cropping as a checkbox toggle for these users. This is mostly related to the fact some people may want to remake spritesheets but more optimized or have an easier time lining up all animations into a single animated image for showcase purposes.
This cropping option only affects PNG sequences, it won't affect "single frame animations" as it's useless on them anyways.
It also doesn't affect GIFs/WebPs as they should be cropped automatically at all times.
"Alpha Threshold (GIFs only):\nThis setting adjusts the level of transparency applied to pixels in GIF images.\nThe threshold value determines the cutoff point for transparency.\nPixels with an alpha value below this threshold become fully transparent, while those above the threshold become fully opaque.\n\n"
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"Indices (not available in global settings):\nSelect the frame indices to use in the animation by typing a comma-separated list of non-negative integers.\n\n"
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"Keep Individual Frames:\nSelect the frames of the animation to save by typing 'all', 'first', 'last', 'none', or a comma-separated list of integers or integer ranges. Negative numbers count from the final frame.\n\n"
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"Crop Individual Frames:\nCrops every extracted png frame. (This doesn't affect GIFs, WebP's or single frame animations)\n\n"
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"Show User Settings:\nOpens a window displaying a list of animations and spritesheets with settings that override the global configuration.\n\n"
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"Start Process:\nBegins the tasks you have selected for processing.\n\n"
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