Version 1.1

This update provides a substantial performance improvement for large aggregates. This includes changes to HopsBasis, HopsAux, and HopsHierarchy classes in addition to changes to the eom_hops_ksuper functions.

1. AuxMapping: The HopsAux objects have been updated so that they now contain dictionaries (dict_p1 and dict_m_1) that keep track of the auxiliaries in the auxiliary basis that are connected by 1 step either up (p1) or down (m1). This is used to dramatically reduce the scale of the for loops implemented within eom_hops_ksuper and is responsible for most of the speed-up provided in this update. This required some updating in HopsHierarchy as well to manage this auxiliary map each time the auxiliary_list is updated.

2. Adaptive Error: We correct an error in the adaptive error equations for managing the flux error towards the boundary states.

3. Two Noise: When two noise functions are used, the sign of the second noise term is now correct (change in hops_eom.py).

4. Documentation: We have made improvements to the documentation of MesoHOPS, particularly the tutorial calculations. In hops_basis.py, the methods associated with calculating the error for the adapative basis are now clearly labelled against the equation numbers in the arxiv manuscript.

Author: digbennett

__init__.py

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-name = "pyhops"
+name = "mesohops"

docs/build/doctrees/basis.doctree

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+config: c02f26641aba381581aa5677b22a8f48
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