fix: generic paths

Author: seankmartin

examples/load_tiff.py

@@ -14,12 +14,8 @@
 
 HERE = Path(__file__).parent
 
-FILEPATH = Path(
-    "/media/starfish/Storage/metacell/Isl1-GFP_E13-5_F129-3_CMN-R-L_02052024-GLC-stitched.ome.tiff"
-)
-OUTPUT_PATH = Path(
-    "/media/starfish/Storage/metacell/converted/Isl1-GFP_E13-5_F129-3_CMN-R-L_02052024-GLC-stitched-raw"
-)
+FILEPATH = Path("...")
+OUTPUT_PATH = Path(".../output")
 OUTPUT_PATH.mkdir(exist_ok=True, parents=True)
 OVERWRITE = False
 

examples/load_tiff_seg.py

@@ -19,12 +19,8 @@
 
 HERE = Path(__file__).parent
 
-FILEPATH = Path(
-    "..."
-)
-OUTPUT_PATH = Path(
-    "..."
-)
+FILEPATH = Path("...")
+OUTPUT_PATH = Path("...")
 OUTPUT_PATH.mkdir(exist_ok=True, parents=True)
 OVERWRITE = False
 
@@ -172,4 +168,4 @@ def process(args):
         OUTPUT_PATH, "mesh", 2, mesh_shape, fill_missing=True
     )
 
-# %% For running all
+# %% For running all