|
| 1 | +import argparse |
| 2 | + |
| 3 | +import neuroglancer |
| 4 | +import neuroglancer.cli |
| 5 | + |
| 6 | +if __name__ == "__main__": |
| 7 | + ap = argparse.ArgumentParser() |
| 8 | + neuroglancer.cli.add_server_arguments(ap) |
| 9 | + args = ap.parse_args() |
| 10 | + neuroglancer.cli.handle_server_arguments(args) |
| 11 | + viewer = neuroglancer.Viewer() |
| 12 | + # We need first, RGB |
| 13 | + properties = [ |
| 14 | + neuroglancer.AnnotationPropertySpec( |
| 15 | + id="color", |
| 16 | + description="Color of the annotation", |
| 17 | + type="rgb", |
| 18 | + default="#ff0000", # red |
| 19 | + ), |
| 20 | + neuroglancer.AnnotationPropertySpec( |
| 21 | + id="size", |
| 22 | + description="Size of the annotation", |
| 23 | + type="float32", |
| 24 | + default=10, |
| 25 | + ), |
| 26 | + neuroglancer.AnnotationPropertySpec( |
| 27 | + id="p_int8", |
| 28 | + type="int8", |
| 29 | + default=10, |
| 30 | + ), |
| 31 | + neuroglancer.AnnotationPropertySpec( |
| 32 | + id="p_uint8", |
| 33 | + type="uint8", |
| 34 | + default=10, |
| 35 | + ), |
| 36 | + neuroglancer.AnnotationPropertySpec( |
| 37 | + id="rgba_color", |
| 38 | + type="rgba", |
| 39 | + default="#00ff00ff", # green with full opacity |
| 40 | + ), |
| 41 | + neuroglancer.AnnotationPropertySpec( |
| 42 | + id="p_enum1", |
| 43 | + type="uint16", |
| 44 | + default=0, |
| 45 | + enum_values=[0, 1, 2, 3], |
| 46 | + enum_labels=[ |
| 47 | + "Option 0", |
| 48 | + "Option 1", |
| 49 | + "Option 2", |
| 50 | + "Option 3", |
| 51 | + ], |
| 52 | + ), |
| 53 | + neuroglancer.AnnotationPropertySpec( |
| 54 | + id="p_fnum32", |
| 55 | + type="float32", |
| 56 | + default=0.0, |
| 57 | + description="A float number property", |
| 58 | + enum_values=[0.0, 1.5, 2.6, 3.0], |
| 59 | + enum_labels=[ |
| 60 | + "Zero", |
| 61 | + "One and a half", |
| 62 | + "Two point six", |
| 63 | + "Three", |
| 64 | + ], |
| 65 | + ), |
| 66 | + ] |
| 67 | + |
| 68 | + def random_values(i): |
| 69 | + return [i * t for t in range(300)] |
| 70 | + |
| 71 | + with viewer.txn() as s: |
| 72 | + s.dimensions = neuroglancer.CoordinateSpace( |
| 73 | + names=["x", "y"], units="nm", scales=[1, 1] |
| 74 | + ) |
| 75 | + s.position = [150, 150] |
| 76 | + s.layers.append( |
| 77 | + name="a", |
| 78 | + layer=neuroglancer.LocalAnnotationLayer( |
| 79 | + dimensions=s.dimensions, |
| 80 | + annotation_properties=properties, |
| 81 | + annotations=[ |
| 82 | + neuroglancer.PointAnnotation( |
| 83 | + id="1", |
| 84 | + point=[150, 150], |
| 85 | + props=[ |
| 86 | + "#00ff00", # green |
| 87 | + 5, # size |
| 88 | + 6, # p_int8 |
| 89 | + 7, # p_uint8 |
| 90 | + "#ff00ffaa", # rgba_color |
| 91 | + 2, # p_enum1 (Option 2) |
| 92 | + 2.6, # p_fnum32 (Two point six) |
| 93 | + ], |
| 94 | + ), |
| 95 | + neuroglancer.PointAnnotation( |
| 96 | + id="2", |
| 97 | + point=[250, 100], |
| 98 | + props=[ |
| 99 | + "#0000ff", # blue |
| 100 | + 10, # size |
| 101 | + -5, # p_int8 |
| 102 | + 20, # p_uint8 |
| 103 | + "#00ffffff", # yellow with full opacity |
| 104 | + 1, # p_enum1 (Option 1) |
| 105 | + 1.5, # p_fnum32 (One and a half) |
| 106 | + ], |
| 107 | + ), |
| 108 | + neuroglancer.PointAnnotation( |
| 109 | + id="3", |
| 110 | + point=[20, 20], |
| 111 | + ), |
| 112 | + ], |
| 113 | + shader=""" |
| 114 | +void main() { |
| 115 | + setColor(prop_color()); |
| 116 | + setPointMarkerSize(prop_size()); |
| 117 | +} |
| 118 | +""", |
| 119 | + ), |
| 120 | + ) |
| 121 | + s.layout = "xy" |
| 122 | + s.selected_layer.layer = "a" |
| 123 | + print("Use `Control+right click` to display annotation details.") |
| 124 | + print(viewer) |
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