Merge pull request #75 from MobleyLab/hbmayes

Add force field terms source file

Author: davidlmobley

.gitignore

@@ -180,4 +180,3 @@ TSWLatexianTemp*
 # KBibTeX
 *~[0-9]*
 
-temp_graphic_files

paper/basic_training.tex

@@ -266,7 +266,7 @@ \subsubsection{Key concepts}
 \item Equilibrium versus non-equilibrium
 \end{itemize}
 
-Traditional discussions of classical statistical mechanics, especially concise ones, tend to focus first or primarily on macroscopic thermodynamics and microscopic \emph{equilibrium} behavior based on the Boltzmann factor, which tells us that configurations $\conf$ occur with (relative) probability $\exp[-U(\conf)/k_B T]$, based on potential energy function $U$ and temperature $T$ in Kelvin units.  
+Traditional discussions of classical statistical mechanics, especially concise ones, tend to focus first or primarily on macroscopic thermodynamics and microscopic \emph{equilibrium} behavior based on the Boltzmann factor, which tells us that configurations $\conf$ occur with (relative) probability $\exp[-U(\conf)/(k_B T)]$, based on potential energy function $U$ and temperature $T$ in absolute units.  
 Dynamical phenomena and their connection to equilibrium tend to be treated later in discussion, if at all.
 However, as the laws of statistical mechanics arise naturally from dynamical equations, we will discuss dynamics first.