Merge pull request #70 from ModECI/experimental

 To v0.3.4

Author: pgleeson

.github/workflows/ci.yml

@@ -12,8 +12,8 @@ jobs:
     name: Format
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
-    - uses: actions/setup-python@v3
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v5
     - uses: pre-commit/[email protected]
       with:
         extra_args: --hook-stage manual --all-files
@@ -28,9 +28,9 @@ jobs:
         runs-on: [ubuntu-latest, macos-latest, windows-latest]
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Set up Python  ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
         python-version:  ${{ matrix.python-version }}
 
@@ -57,7 +57,6 @@ jobs:
         python test.py
 
     - name: Test NeuroML examples
-      if: ${{ matrix.python-version != '3.7'}}
       run: |
 
         cd examples/neuroml2
@@ -66,7 +65,6 @@ jobs:
         # Note: NeuroML files will be validated with OMV below
 
     - name: Test SBML examples
-      if: ${{ matrix.python-version != '3.7'}}
       run: |
 
         cd examples/sbml
@@ -76,11 +74,11 @@ jobs:
       run: |
         pytest tests -v
 
-    - name: Install & test NeuroMLlite
+    - name: Test NeuroMLlite
       run: |
           git clone --branch development https://github.com/NeuroML/NeuroMLlite.git
           cd NeuroMLlite
-          #pip install . # Use versions of neuroml libs as set in setup.py
+          # pip install . # Use versions of neuroml libs as set in modelspec's setup.cfg -> dev -> NeuroMLlite
           cd examples
           python Example1.py
 
@@ -94,7 +92,6 @@ jobs:
           python arrays.py -run   # test one example
 
     - name: Build Documentation
-      if: ${{ matrix.python-version != '3.7'}}
       run: |
         # Note: contributors generation below fails on py 3.7 due to pandas version...
         pip install .[docs]

docs/sphinx/source/api/Contributors.md

@@ -3,7 +3,7 @@
 # Modelspec contributors
 
 This page list names and Github profiles of contributors to Modelspec, listed in no particular order.
-This page is generated periodically, most recently on 2023-12-13.
+This page is generated periodically, most recently on 2024-02-07.
 
 - Padraig Gleeson ([@pgleeson](https://github.com/pgleeson))
 - Manifest Chakalov  ([@mqnifestkelvin](https://github.com/mqnifestkelvin))
@@ -12,3 +12,4 @@ This page is generated periodically, most recently on 2023-12-13.
 - Parikshit Singh Rathore ([@parikshit14](https://github.com/parikshit14))
 - Ankur Sinha ([@sanjayankur31](https://github.com/sanjayankur31))
 - kmantel ([@kmantel](https://github.com/kmantel))
+- Robert Vickerstaff ([@robertvi](https://github.com/robertvi))

src/modelspec/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "0.3.3"
+__version__ = "0.3.4"
 
 from .base_types import Base, define, has, field, fields, optional, instance_of, in_