Merge pull request #59 from ModECI/test_neuroml

Adds OMV tests for validating NeuroML

Author: pgleeson

.github/workflows/ci.yml

@@ -60,11 +60,7 @@ jobs:
         cd ../neuroml2
         python neuroml2_spec.py
 
-        pip install pyneuroml
-
-        # Requires: pip install pyneuroml
-        pynml -validate hello_world_neuroml.net.nml
-        pynml -validate TestNeuroML.xml
+        # Note: NeuroML files will be validated with OMV below
 
     - name: Run pytest
       run: |
@@ -78,7 +74,6 @@ jobs:
           cd examples
           python Example1.py
 
-
     - name: Install MDF
       run: |
 
@@ -100,6 +95,20 @@ jobs:
         make clean
         make html
 
+    - name: Install and test with OMV
+      if: ${{ matrix.runs-on != 'windows-latest' }}
+      run: |
+        # Note: OMV not well tested on Windows...
+
+        pip install git+https://github.com/OpenSourceBrain/osb-model-validation
+        pip install scipy sympy matplotlib cython pandas tables
+
+        # Run OMV tests on all engines
+        cd examples
+        omv all -V
+
+        omv list -V # list installed engines
+
     - name: Final version info
       run: |
           pip list

examples/neuroml2/.test.validate.omt

@@ -0,0 +1,5 @@
+# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+
+# This test will validate NeuroML 2 files in the current directory using: jnml -validate *.nml
+target: "*.nml TestNeuroML.xml"
+engine: jNeuroML_validate

test_all.sh

@@ -31,6 +31,10 @@ cd ../..
 
 pytest tests -v
 
+## Run OMV tests
+
+omv all -V
+
 
 ## Generate the docs
 
@@ -42,4 +46,6 @@ make clean
 make html
 cd ..
 
+## Format all file
+
 pre-commit run --all-files