precommited and added better code description

Author: mqnifestkelvin

examples/neuroml2/neuroml2_spec.py

@@ -116,7 +116,8 @@ class neuroml(Base):
         validator=instance_of(str), default="http://www.neuroml.org/schema/neuroml2"
     )
     xmln_loc_2: str = field(
-        validator=instance_of(str), default="https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd"
+        validator=instance_of(str),
+        default="https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd",
     )
 
     izhikevich2007Cells: List[izhikevich2007Cell] = field(factory=list)
@@ -198,5 +199,6 @@ class neuroml(Base):
         d.write(yy)
 
     from modelspec.utils import load_xml
-    new_neuroml = load_xml('hello_world_neuroml.net.nml')
+
+    new_neuroml = load_xml("hello_world_neuroml.net.nml")
     print(new_neuroml)

src/modelspec/utils.py

@@ -72,7 +72,9 @@ def load_xml(filename: str):
         root = tree.getroot()  # Get the root element
 
     # Convert the ElementTree object to a dictionary
-    xml_string = ET.tostring(root).decode().replace('ns0:', '').replace(':ns0', '').strip()
+    xml_string = (
+        ET.tostring(root).decode().replace("ns0:", "").replace(":ns0", "").strip()
+    )
 
     removed_namespaces = process_xml_namespace(xml_string)
     data = element_to_dict(removed_namespaces)
@@ -99,11 +101,11 @@ def element_to_dict(element):
 
     children_by_tag = {}
     for child_element in element:
-        child_key = child_element.tag + 's'
+        child_key = child_element.tag + "s"
         child_value = element_to_dict(child_element)
 
         # Check if the child element has an 'id' attribute
-        if 'id' in child_element.attrib:
+        if "id" in child_element.attrib:
             # If the child element has an 'id', add it to the result dictionary directly
             result[child_key] = child_value
         else:
@@ -121,10 +123,10 @@ def process_xml_namespace(xml_string):
     ignored_elements = [
         'xmlns="http://www.neuroml.org/schema/neuroml2"',
         'xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"',
-        'xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd"'
+        'xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd"',
     ]
     for ignored_element in ignored_elements:
-        xml_string = xml_string.replace(ignored_element, '').strip()
+        xml_string = xml_string.replace(ignored_element, "").strip()
 
     # Parse the XML string into an ElementTree
     root = ET.fromstring(xml_string)
@@ -242,7 +244,10 @@ def build_xml_element(data, parent=None):
             for child in children:
                 child_element = build_xml_element(child)
                 parent.append(child_element)
-        elif not any(hasattr(data, attr_name) for attr_name in ["xmlns", "xmlns_url", "xmlns_loc", "xmln_loc_2"]):
+        elif not any(
+            hasattr(data, attr_name)
+            for attr_name in ["xmlns", "xmlns_url", "xmlns_loc", "xmln_loc_2"]
+        ):
             attribute_name = aattr.name
             attribute_value = data.__getattribute__(aattr.name)
             parent.set(attribute_name, str(attribute_value))
@@ -252,12 +257,11 @@ def build_xml_element(data, parent=None):
     if hasattr(data, "xmlns_url"):
         parent.set("xmlns:xsi", data.xmlns_url)
     if hasattr(data, "xmlns_loc"):
-        parent.set("xsi:schemaLocation", str(data.xmlns_loc + '\n' + data.xmln_loc_2))
+        parent.set("xsi:schemaLocation", str(data.xmlns_loc + "\n" + data.xmln_loc_2))
 
     return parent
 
 
-
 def ascii_encode_dict(data):
     ascii_encode = (
         lambda x: x.encode("ascii")