Triggering ModelSEEDpy update

Author: Christopher Henry

Dockerfile

@@ -36,9 +36,9 @@ RUN pip install networkx
 RUN pip install deepdiff
 RUN pip install h5py
 
-RUN echo '36' >/dev/null && pip install --use-deprecated=legacy-resolver git+https://github.com/cshenry/ModelSEEDpy.git
+RUN echo '38' >/dev/null && pip install --use-deprecated=legacy-resolver git+https://github.com/cshenry/ModelSEEDpy.git
 
-RUN echo '30' >/dev/null && mkdir deps && cd deps && \
+RUN echo '31' >/dev/null && mkdir deps && cd deps && \
 	git clone --branch main https://github.com/cshenry/KBBaseModules.git
 RUN echo '1' >/dev/null && cd deps && \
 	git clone https://github.com/ModelSEED/ModelSEEDDatabase.git && \

lib/ModelSEEDReconstruction/modelseedrecon.py

@@ -172,11 +172,7 @@ def build_metabolic_models(self,params):
                     for rxn in mdl.reactions:
                         if not mdlutl.is_core(rxn) and rxn.id[0:3] != "bio" and rxn.id[0:3] != "DM_" and rxn.id[0:3] != "EX_" and rxn.id[0:3] != "SK_":
                             remove_list.append(rxn.id)
-                    print("Removing non-core reactions:",remove_list)
                     mdl.remove_reactions(remove_list)
-                    print("Remaining reactions:")
-                    for item in mdl.reactions:
-                        print(item.id)
                 #Now extending model with selected ontology priorities
                 if params["ontology_events"] == None and len(params["annotation_priority"]) > 0:
                     params["ontology_events"] = genome.annoont.get_events_from_priority_list(params["annotation_priority"])