README.md

A Multi-Dimensional Map of Pediatric B-cell Leukemia

This repository contains scripts, data, and other resources for my publication.

Folders included

• scripts/: Contains scripts corresponding to each section of the publication (R scripts or Jupyter Notebooks).

Requirements

Install the necessary dependencies for:

• R: session_info.yml

For the copy number analysis in the Revision folder, the following versions were used:

• R: methylumi v. 2.54.0 and conumee2 v. 2.1.2

• Python: main_environment.yml - for all Python-based analyses except for the survival models

conda env create -f main_environment.yml

• Python: survival_environemnt.yml - for building the survival models

conda env create -f survival_environment.yml