Merge branch 'main' of https://github.com/MonashBioinformaticsPlatform/Functional_Enrichment_BioCommons_2024

Author: calizilla

06-web-tools.Rmd

@@ -567,3 +567,4 @@ Functional enrichment analysis (FEA) typically involves one of over representati
 - Use different pipelines or parameter configurations as part of sensitivity analysis to check the consistency of results.
 
 - Share complete analysis workflows, including code and documentation, to allow others to replicate the findings accurately.
+

10-r-environment-setup.Rmd

@@ -225,7 +225,7 @@ The code chunk labelled `working directory` contains only "hashed out" code and
 
 Note that the default directory for RStusio (set in the 'Global options') and the default directory for a code notebook differ! You can change the working directory of the console to match the notebook by issuing the below command into your console directly:
 
-```{r plot, echo=TRUE, eval=FALSE}
+```{r plot2, echo=TRUE, eval=FALSE}
 setwd("workshop")
 ``` 
 

index.Rmd

@@ -1,9 +1,7 @@
 ---
 title: "Functional Enrichment Workshop"
 author: 'Australian Biocommons, Sydney Informatics Hub (USYD) and Monash Genomics and Bioinformatics Platform (MGBP)'
-date: |
-    "`r format(Sys.Date(), '%B %d, %Y')`" 
-    <img src="logos.png" width="300" alt="Logo"><br>
+date: <span>"`r format(Sys.Date(), '%B %d, %Y')`"</span>  <br><img src="logos.png" width="300" alt="Logo"><br>
 site: bookdown::bookdown_site
 output: bookdown::bs4_book
 documentclass: book