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‎index.html‎

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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta charset="UTF-8">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
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<title>Monash Genomics & Bioinformatics Platform - GitHub Projects</title>
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<!-- Tailwind CSS from CDN -->
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<script src="https://cdn.tailwindcss.com"></script>
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<!-- Vue.js from CDN -->
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<script src="https://unpkg.com/vue@3/dist/vue.global.js"></script>
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<script>
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tailwind.config = {
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theme: {
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extend: {
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colors: {
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monash: '#005F9A',
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}
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}
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}
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}
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</script>
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<style type="text/tailwindcss">
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@layer components {
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.repo-card {
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@apply bg-white rounded-lg shadow-md overflow-hidden transition-transform hover:shadow-lg hover:scale-105;
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}
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.repo-card-header {
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@apply bg-monash text-white px-4 py-3 font-bold text-xl;
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}
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.repo-card-body {
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@apply p-4;
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}
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.repo-name {
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@apply text-gray-700 mb-3 font-mono text-sm;
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}
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.repo-image {
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@apply bg-gray-100 h-40 w-full flex items-center justify-center mb-3 rounded;
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}
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.section-header {
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@apply text-2xl font-bold text-monash mb-6 mt-12 border-b-2 border-monash pb-2;
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}
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}
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</style>
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</head>
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<body class="bg-gray-50 min-h-screen">
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<div id="app">
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<header class="bg-monash text-white py-10">
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<div class="container mx-auto px-4">
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<h1 class="text-4xl font-bold">Monash Genomics & Bioinformatics Platform</h1>
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<p class="text-xl mt-2">Open Source GitHub Projects</p>
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</div>
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</header>
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<main class="container mx-auto px-4 py-8">
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<!-- Web apps and dashboards -->
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<section>
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<h2 class="section-header">Web Apps and Dashboards</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<repo-tile
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v-for="repo in webApps"
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:key="repo.name"
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:title="repo.title"
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:repo-name="repo.repoName"
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:description="repo.description"
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:url="repo.url"
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:repo-image="repo.repoImage">
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</repo-tile>
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</div>
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</section>
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<!-- Commandline tools -->
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<section>
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<h2 class="section-header">Commandline Tools</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<repo-tile
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v-for="repo in commandlineTools"
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:key="repo.name"
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:title="repo.title"
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:repo-name="repo.repoName"
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:description="repo.description"
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:url="repo.url"
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:repo-image="repo.repoImage">
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</repo-tile>
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</div>
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</section>
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<!-- Data Analysis -->
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<section>
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<h2 class="section-header">Data Analysis Tools</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<repo-tile
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v-for="repo in dataAnalysisTools"
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:key="repo.name"
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:title="repo.title"
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:repo-name="repo.repoName"
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:description="repo.description"
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:url="repo.url"
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:repo-image="repo.repoImage">
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</repo-tile>
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</div>
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</section>
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<!-- Empty sections for future additions -->
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<section>
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<h2 class="section-header">Pipelines</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<div class="flex items-center justify-center p-8 bg-gray-100 rounded-lg">
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<p class="text-gray-500 italic">Future pipelines will be listed here</p>
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</div>
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</div>
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</section>
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<section>
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<h2 class="section-header">Training & Workshops</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<div class="flex items-center justify-center p-8 bg-gray-100 rounded-lg">
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<p class="text-gray-500 italic">Future training materials will be listed here</p>
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</div>
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</div>
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</section>
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<section>
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<h2 class="section-header">Open Analysis Projects</h2>
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<div class="grid grid-cols-1 md:grid-cols-3 gap-6">
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<div class="flex items-center justify-center p-8 bg-gray-100 rounded-lg">
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<p class="text-gray-500 italic">Future analysis projects will be listed here</p>
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</div>
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</div>
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</section>
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</main>
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<footer class="bg-gray-800 text-white py-8">
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<div class="container mx-auto px-4">
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<div class="flex flex-col md:flex-row justify-between items-center">
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<div class="mb-4 md:mb-0">
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<h3 class="text-xl font-bold">Monash Bioinformatics Platform</h3>
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<p class="mt-2">Providing bioinformatics support and solutions</p>
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</div>
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<div>
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<a href="https://github.com/MonashBioinformaticsPlatform" target="_blank" class="inline-flex items-center text-white hover:text-gray-300">
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<svg class="h-6 w-6 mr-2" fill="currentColor" viewBox="0 0 24 24" aria-hidden="true">
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<path fill-rule="evenodd" d="M12 2C6.477 2 2 6.484 2 12.017c0 4.425 2.865 8.18 6.839 9.504.5.092.682-.217.682-.483 0-.237-.008-.868-.013-1.703-2.782.605-3.369-1.343-3.369-1.343-.454-1.158-1.11-1.466-1.11-1.466-.908-.62.069-.608.069-.608 1.003.07 1.531 1.032 1.531 1.032.892 1.53 2.341 1.088 2.91.832.092-.647.35-1.088.636-1.338-2.22-.253-4.555-1.113-4.555-4.951 0-1.093.39-1.988 1.029-2.688-.103-.253-.446-1.272.098-2.65 0 0 .84-.27 2.75 1.026A9.564 9.564 0 0112 6.844c.85.004 1.705.115 2.504.337 1.909-1.296 2.747-1.027 2.747-1.027.546 1.379.202 2.398.1 2.651.64.7 1.028 1.595 1.028 2.688 0 3.848-2.339 4.695-4.566 4.943.359.309.678.92.678 1.855 0 1.338-.012 2.419-.012 2.747 0 .268.18.58.688.482A10.019 10.019 0 0022 12.017C22 6.484 17.522 2 12 2z" clip-rule="evenodd"></path>
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</svg>
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GitHub Organization
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</a>
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</div>
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</div>
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<div class="mt-8 pt-8 border-t border-gray-700 text-center text-sm text-gray-400">
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© 2023 Monash Bioinformatics Platform. All rights reserved.
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</div>
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</div>
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</footer>
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</div>
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<!-- Vue Component Templates -->
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<script type="text/x-template" id="repo-tile-template">
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<a :href="url" target="_blank" class="repo-card">
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<div class="repo-card-header">{{ title }}</div>
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<div class="repo-card-body">
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<div class="repo-name">{{ repoName }}</div>
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<div class="repo-image">
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<img v-if="repoImage" :src="repoImage" :alt="title" class="h-full w-full object-contain">
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<svg v-else xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke="currentColor" class="h-12 w-12 text-gray-400">
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<path stroke-linecap="round" stroke-linejoin="round" stroke-width="1" d="M4 16l4.586-4.586a2 2 0 012.828 0L16 16m-2-2l1.586-1.586a2 2 0 012.828 0L20 14m-6-6h.01M6 20h12a2 2 0 002-2V6a2 2 0 00-2-2H6a2 2 0 00-2 2v12a2 2 0 002 2z" />
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</svg>
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</div>
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<p class="text-gray-600">{{ description }}</p>
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</div>
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</a>
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</script>
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<!-- Vue.js Application Code -->
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<script>
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// Define the repo-tile component
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const { createApp } = Vue;
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const app = createApp({
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data() {
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return {
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webApps: [
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{
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title: 'LFQ-Analyst',
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repoName: 'MonashBioinformaticsPlatform/LFQ-Analyst',
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description: 'A web application for analyzing label-free quantitation proteomics data',
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url: 'https://github.com/MonashBioinformaticsPlatform/LFQ-Analyst',
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repoImage: 'https://github.com/MonashBioinformaticsPlatform/LFQ-Analyst/raw/master/www/LFQ_analyst.svg'
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},
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{
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title: 'Laxy',
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repoName: 'MonashBioinformaticsPlatform/laxy',
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description: 'A web platform for running bioinformatics analyses in the cloud',
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url: 'https://github.com/MonashBioinformaticsPlatform/laxy',
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repoImage: 'https://github.com/MonashBioinformaticsPlatform/laxy/raw/master/docs/screenshots/job_page.png'
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}
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],
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commandlineTools: [
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{
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title: 'Bio-Ansible',
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repoName: 'MonashBioinformaticsPlatform/bio-ansible',
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description: 'Ansible playbooks for setting up bioinformatics environments',
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url: 'https://github.com/MonashBioinformaticsPlatform/bio-ansible',
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repoImage: null
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},
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{
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title: 'Rocker-Ultra',
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repoName: 'MonashBioinformaticsPlatform/rocker-ultra',
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description: 'Extended Docker containers for R-based bioinformatics',
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url: 'https://github.com/MonashBioinformaticsPlatform/rocker-ultra',
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repoImage: null
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}
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],
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dataAnalysisTools: [
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{
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title: 'Varistran',
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repoName: 'MonashBioinformaticsPlatform/varistran',
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description: 'Variance-stabilizing transformation for RNA-seq data visualization',
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url: 'https://github.com/MonashBioinformaticsPlatform/varistran',
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repoImage: null
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},
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{
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title: 'Celaref',
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repoName: 'MonashBioinformaticsPlatform/celaref',
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description: 'Single-cell annotation by reference',
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url: 'https://github.com/MonashBioinformaticsPlatform/celaref',
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repoImage: null
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}
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]
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}
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}
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});
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// Register the repo-tile component
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app.component('repo-tile', {
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template: '#repo-tile-template',
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props: {
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title: String,
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repoName: String,
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description: String,
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url: String,
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repoImage: String
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}
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});
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// Mount the app
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app.mount('#app');
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</script>
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</body>
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</html>

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