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.nojekyll

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code_and_data.html

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index.html

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<p>Our lab is at <a href="https://www.janelia.org/">HHMI Janelia Research Campus</a> (near DC), a fully-funded non-profit research institution. Janelia just received a $500 million investment for AI research 🤖, more info <a href="https://ai.hhmi.org/">here</a>.</p>
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<p>We are recruiting <a href="./positions.html">postdocs</a>!</p>
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<p>Our lab is at <a href="https://www.janelia.org/">HHMI Janelia Research Campus</a> (near DC), a fully-funded non-profit research institution.</p>
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<section id="research" class="level2">
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<h2 class="anchored" data-anchor-id="research">Research</h2>
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<p>Our lab combines machine learning / AI techniques and large-scale imaging to investigate plasticity rules and sensory representations in cortical circuits. Example recording of 50,000+ neurons simultaneously at 3Hz, using two-photon calcium imaging:</p>
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<section id="news" class="level2">
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<h2 class="anchored" data-anchor-id="news">News</h2>
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<ul>
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<li>Check out our lab’s SfN posters:
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<ul>
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<li><strong>Nov 17 PM Q2</strong>: PSTR224.08. Train/test behavioral cross-validation reveals neural correlates in mice</li>
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<li><strong>Nov 17 PM O10</strong>: PSTR223.05. Analyzing large-scale neural data with Suite2p</li>
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<li><strong>Nov 19 AM R8</strong>: PSTR394.02. Impact of eye movements and orofacial movements on mouse visual cortex</li>
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<li><strong>Nov 19 PM Q9</strong>: PSTR450.05. Spatial or temporal prediction in mouse visual cortex</li>
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<li><strong>Nov 19 PM S8</strong>: PSTR451.12. A critical initialization for biological neural networks</li>
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</ul></li>
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<li>Congrats to Qingqing Zhang et al, preprint now out on <a href="https://www.biorxiv.org/content/10.1101/2025.09.17.676794v1">Spatial predictive coding in visual cortical neurons</a>!</li>
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<li>Fengtong Du’s <a href="https://www.nature.com/articles/s41467-025-61171-9">paper</a> on minimodels of visual cortical neurons in mice and monkeys now published! <a href="https://www.janelia.org/news/new-computational-model-could-help-shed-light-on-how-we-see">News coverage</a></li>
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<li>Lin Zhong’s <a href="https://www.nature.com/articles/s41586-025-09180-y">paper</a> on unsupervised learning now published! <a href="https://www.janelia.org/news/zoning-out-could-be-beneficial%E2%80%94and-may-actually-help-us-learn-faster">News coverage</a></li>
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<li><a href="https://www.nature.com/articles/s41592-025-02595-5">Cellpose3</a> now published! <a href="https://www.janelia.org/news/newest-version-of-cellpose-can-spot-cell-boundaries-even-in-cloudy-conditions">News coverage</a></li>
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<li><a href="https://www.science.org/stoken/author-tokens/ST-2239/full">Analysis methods for large-scale neuronal recordings</a> review published!</li>
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<li>Cellpose development highlighted in a Nature <a href="https://www.nature.com/articles/d41586-024-03344-y">technology feature</a>!</li>
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<li>Rastermap paper is now out <a href="https://www.nature.com/articles/s41593-024-01783-4">here</a>! <a href="https://medicalxpress.com/news/2024-10-visualization-method-large-neuronal-datasets.html">News coverage</a></li>
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<li>Congrats to Fengtong Du et al, preprint now out: <a href="https://www.biorxiv.org/content/10.1101/2024.06.30.601394.abstract">Towards a simplified model of primary visual cortex</a>!</li>
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<li>Kilosort4 paper is now out <a href="https://www.nature.com/articles/s41592-024-02232-7">here</a>!</li>
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<li>Congrats to Lin Zhong et al, preprint now out on <a href="https://www.biorxiv.org/content/10.1101/2024.02.25.581990v1">Distinct streams for supervised and unsupervised learning in the visual cortex</a>!</li>
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<li>Facemap was featured in a Nature Methods <a href="https://www.nature.com/articles/s41592-023-02154-w">research highlight</a>!</li>
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people/carsen.html

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positions.html

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