MultiQC_SAV/.github/workflows/linux.yaml at e033b55d87a7ae32d758a978f813ceaeba9598f9 · MultiQC/MultiQC_SAV · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
name: "Build - Linux"

on:
  push:
    branches: [main, master]
  pull_request:

jobs:
  test:
    name: Linux - Python ${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    timeout-minutes: 10

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel
          pip install beautifulsoup4 multiqc

      - name: Install MultiQC_SAV
        run: pip install .

      - name: Test MiSeq
        run: multiqc -m SAV test_data/MiSeq

      - name: Test HiSeq
        run: multiqc -m SAV test_data/HiSeq

      - name: Test NextSeq500
        run: multiqc -m SAV test_data/NextSeq500

      - name: Test NextSeq2000
        run: multiqc -m SAV test_data/NextSeq2000

      - name: Test NovaSeq
        run: multiqc -m SAV test_data/NovaSeq