diff --git a/data/modules/fgbio/Sample1_collapsed_grouped.duplex_family_sizes.txt b/data/modules/fgbio/Sample1_collapsed_grouped.duplex_family_sizes.txt
new file mode 100755
index 00000000..cd856274
--- /dev/null
+++ b/data/modules/fgbio/Sample1_collapsed_grouped.duplex_family_sizes.txt
@@ -0,0 +1,79 @@
+ab_size	ba_size	count	fraction	fraction_gt_or_eq_size
+1	0	3898545	0.589279	1
+1	1	163717	0.024746	0.064372
+2	0	1469639	0.222141	0.385975
+2	1	126345	0.019097	0.039626
+2	2	24548	0.003711	0.00958
+3	0	528174	0.079835	0.141026
+3	1	46385	0.007011	0.016818
+3	2	18766	0.002837	0.005869
+3	3	3554	0.000537	0.00139
+4	0	188528	0.028497	0.050805
+4	1	16702	0.002525	0.006433
+4	2	6850	0.001035	0.002495
+4	3	2671	0.000404	0.000853
+4	4	481	0.000073	0.0002
+5	0	67404	0.010188	0.018272
+5	1	5970	0.000902	0.002396
+5	2	2545	0.000385	0.000984
+5	3	1030	0.000156	0.000377
+5	4	398	0.00006	0.000127
+5	5	72	0.000011	0.000029
+6	0	24180	0.003655	0.00657
+6	1	2155	0.000326	0.000883
+6	2	948	0.000143	0.000372
+6	3	388	0.000059	0.00015
+6	4	143	0.000022	0.000056
+6	5	56	8.4646E-6	0.000018
+6	6	14	2.11615E-6	4.68576E-6
+7	0	8548	0.001292	0.002355
+7	1	764	0.000115	0.000323
+7	2	348	0.000053	0.000138
+7	3	149	0.000023	0.000059
+7	4	72	0.000011	0.000024
+7	5	16	2.41846E-6	7.25537E-6
+7	6	8	1.20923E-6	2.56961E-6
+7	7	1	1.51154E-7	4.53461E-7
+8	0	3090	0.000467	0.000858
+8	1	288	0.000044	0.000117
+8	2	103	0.000016	0.000048
+8	3	52	7.85998E-6	0.000022
+8	4	24	3.62768E-6	9.37152E-6
+8	5	4	6.04614E-7	3.47653E-6
+8	6	2	3.02307E-7	1.20923E-6
+8	7	1	1.51154E-7	3.02307E-7
+9	0	1157	0.000175	0.000319
+9	1	108	0.000016	0.000046
+9	2	44	6.65076E-6	0.00002
+9	3	19	2.87192E-6	9.22037E-6
+9	4	6	9.06921E-7	4.68576E-6
+9	5	8	1.20923E-6	2.41846E-6
+9	6	2	3.02307E-7	7.55768E-7
+10	0	392	0.000059	0.000116
+10	1	42	6.34845E-6	0.000018
+10	2	17	2.56961E-6	8.16229E-6
+10	3	7	1.05807E-6	3.92999E-6
+10	4	8	1.20923E-6	2.2673E-6
+10	6	2	3.02307E-7	4.53461E-7
+11	0	157	0.000024	0.000045
+11	1	14	2.11615E-6	6.04614E-6
+11	2	7	1.05807E-6	3.02307E-6
+11	3	3	4.53461E-7	1.36038E-6
+11	4	1	1.51154E-7	7.55768E-7
+11	5	2	3.02307E-7	6.04614E-7
+11	7	1	1.51154E-7	1.51154E-7
+12	0	60	9.06921E-6	0.000017
+12	1	4	6.04614E-7	1.81384E-6
+12	2	2	3.02307E-7	9.06921E-7
+12	5	1	1.51154E-7	1.51154E-7
+13	0	27	4.08115E-6	7.25537E-6
+13	1	1	1.51154E-7	7.55768E-7
+14	0	4	6.04614E-7	3.02307E-6
+14	2	1	1.51154E-7	4.53461E-7
+14	3	1	1.51154E-7	1.51154E-7
+15	0	9	1.36038E-6	2.11615E-6
+15	1	1	1.51154E-7	3.02307E-7
+16	0	1	1.51154E-7	6.04614E-7
+16	2	1	1.51154E-7	1.51154E-7
+17	0	1	1.51154E-7	3.02307E-7
+23	0	1	1.51154E-7	1.51154E-7
diff --git a/data/modules/fgbio/Sample1_collapsed_grouped.duplex_yield_metrics.txt b/data/modules/fgbio/Sample1_collapsed_grouped.duplex_yield_metrics.txt
new file mode 100755
index 00000000..9c2af42d
--- /dev/null
+++ b/data/modules/fgbio/Sample1_collapsed_grouped.duplex_yield_metrics.txt
@@ -0,0 +1,21 @@
+fraction	read_pairs	cs_families	ss_families	ds_families	ds_duplexes	ds_fraction_duplexes	ds_fraction_duplexes_ideal
+0.05	556736	537604	541259	538667	2592	0.004812	0.016509
+0.1	1113861	1039738	1053452	1043612	9840	0.009429	0.032592
+0.15	1670081	1508549	1537601	1516618	20983	0.013835	0.048215
+0.2	2225837	1947916	1996379	1961339	35040	0.017865	0.063261
+0.25	2781076	2360167	2431928	2379948	51980	0.021841	0.077865
+0.3	3337593	2748574	2846291	2775209	71082	0.025613	0.092215
+0.35	3894794	3115330	3241463	3149436	92027	0.02922	0.106098
+0.4	4449331	3459639	3615986	3501523	114463	0.032689	0.119583
+0.45	5006303	3786738	3975049	3836925	138124	0.035999	0.132704
+0.5	5562847	4096549	4317694	4155063	162631	0.03914	0.145466
+0.55	6118956	4389992	4645004	4457133	187871	0.042151	0.157849
+0.6	6676758	4669606	4959059	4745371	213688	0.045031	0.169949
+0.65	7233533	4934984	5258996	5019158	239838	0.047785	0.181701
+0.7	7788866	5186250	5545150	5278802	266348	0.050456	0.193202
+0.75	8345357	5426740	5820353	5527636	292717	0.052955	0.204374
+0.8	8901093	5655550	6084511	5764796	319715	0.05546	0.215273
+0.85	9457394	5874154	6337738	5991642	346096	0.057763	0.225914
+0.9	10014450	6083233	6581750	6208936	372814	0.060045	0.236332
+0.95	10571338	6283131	6816391	6416883	399508	0.062259	0.246516
+1	11127423	6474076	7041663	6615790	425873	0.064372	0.256432
diff --git a/data/modules/fgbio/Sample1_collapsed_grouped.family_sizes.txt b/data/modules/fgbio/Sample1_collapsed_grouped.family_sizes.txt
new file mode 100755
index 00000000..71e8de6e
--- /dev/null
+++ b/data/modules/fgbio/Sample1_collapsed_grouped.family_sizes.txt
@@ -0,0 +1,21 @@
+family_size	cs_count	cs_fraction	cs_fraction_gt_or_eq_size	ss_count	ss_fraction	ss_fraction_gt_or_eq_size	ds_count	ds_fraction	ds_fraction_gt_or_eq_size
+1	3741726	0.577955	1	4424758	0.628368	1	3898545	0.589279	1
+2	1604837	0.247887	0.422045	1674712	0.237829	0.371632	1633356	0.246888	0.410721
+3	662906	0.102394	0.174158	604753	0.085882	0.133803	654519	0.098933	0.163834
+4	272708	0.042123	0.071764	216365	0.030726	0.04792	259461	0.039218	0.064901
+5	112244	0.017337	0.029641	77578	0.011017	0.017194	102872	0.015549	0.025682
+6	46542	0.007189	0.012304	27912	0.003964	0.006177	40554	0.00613	0.010133
+7	19165	0.00296	0.005115	9909	0.001407	0.002213	15919	0.002406	0.004003
+8	8016	0.001238	0.002154	3564	0.000506	0.000806	6313	0.000954	0.001597
+9	3481	0.000538	0.000916	1344	0.000191	0.0003	2579	0.00039	0.000643
+10	1393	0.000215	0.000379	468	0.000066	0.000109	967	0.000146	0.000253
+11	598	0.000092	0.000163	185	0.000026	0.000043	423	0.000064	0.000107
+12	273	0.000042	0.000071	67	9.5148E-6	0.000016	164	0.000025	0.000043
+13	101	0.000016	0.000029	28	3.97633E-6	6.81657E-6	63	9.52267E-6	0.000018
+14	50	7.72311E-6	0.000013	6	8.52071E-7	2.84024E-6	29	4.38345E-6	8.31344E-6
+15	15	2.31693E-6	5.56064E-6	10	1.42012E-6	1.98817E-6	13	1.965E-6	3.92999E-6
+16	8	1.2357E-6	3.24371E-6	2	2.84024E-7	5.68048E-7	7	1.05807E-6	1.965E-6
+17	4	6.17849E-7	2.00801E-6	1	1.42012E-7	2.84024E-7	3	4.53461E-7	9.06921E-7
+18	6	9.26773E-7	1.39016E-6	0	0	1.42012E-7	2	3.02307E-7	4.53461E-7
+20	2	3.08924E-7	4.63387E-7	0	0	1.42012E-7	0	0	1.51154E-7
+23	1	1.54462E-7	1.54462E-7	1	1.42012E-7	1.42012E-7	1	1.51154E-7	1.51154E-7
diff --git a/data/modules/fgbio/Sample1_collapsed_grouped.umi_counts.txt b/data/modules/fgbio/Sample1_collapsed_grouped.umi_counts.txt
new file mode 100755
index 00000000..1c9a364b
--- /dev/null
+++ b/data/modules/fgbio/Sample1_collapsed_grouped.umi_counts.txt
@@ -0,0 +1,113 @@
+umi	raw_observations	raw_observations_with_errors	unique_observations	fraction_raw_observations	fraction_unique_observations
+AAA	363487	363	216738	0.016333	0.01638
+AAC	354936	421	211050	0.015949	0.01595
+AAG	292283	352	174547	0.013133	0.013192
+AAN	828	828	413	0.000037	0.000031
+AAT	580360	1116	344327	0.026078	0.026023
+ACA	144693	236	86872	0.006502	0.006566
+ACC	385185	501	228699	0.017308	0.017284
+ACG	331507	421	197295	0.014896	0.014911
+ACN	620	620	310	0.000028	0.000023
+ACT	333317	577	198350	0.014977	0.014991
+AGA	336093	359	200288	0.015102	0.015137
+AGC	139027	159	82895	0.006247	0.006265
+AGG	206203	251	123299	0.009266	0.009319
+AGN	431	431	215	0.000019	0.000016
+AGT	282967	317	168420	0.012715	0.012729
+ANA	598	598	299	0.000027	0.000023
+ANC	732	732	366	0.000033	0.000028
+ANG	691	691	345	0.000031	0.000026
+ANT	1634	1634	817	0.000073	0.000062
+ATA	529117	602	315890	0.023775	0.023874
+ATC	320665	423	190434	0.014409	0.014392
+ATG	447730	649	266067	0.020118	0.020108
+ATN	925	925	462	0.000042	0.000035
+ATT	472476	643	280505	0.02123	0.0212
+CAA	233572	241	139643	0.010495	0.010554
+CAC	232419	288	137873	0.010444	0.01042
+CAG	150606	189	90076	0.006767	0.006808
+CAN	427	427	213	0.000019	0.000016
+CAT	345448	443	205219	0.015522	0.01551
+CCA	213098	352	127677	0.009575	0.009649
+CCC	501579	644	297753	0.022538	0.022503
+CCG	478608	650	283709	0.021506	0.021442
+CCN	995	995	495	0.000045	0.000037
+CCT	550471	823	327239	0.024735	0.024732
+CGA	213890	231	127796	0.009611	0.009658
+CGC	97976	103	58665	0.004402	0.004434
+CGG	169327	174	100843	0.007609	0.007621
+CGN	633	633	316	0.000028	0.000024
+CGT	363769	482	217380	0.016346	0.016429
+CNA	366	366	183	0.000016	0.000014
+CNC	584	584	291	0.000026	0.000022
+CNG	599	599	299	0.000027	0.000023
+CNT	894	894	447	0.00004	0.000034
+CTA	289456	387	172155	0.013006	0.013011
+CTC	343161	464	203989	0.01542	0.015417
+CTG	467467	683	276381	0.021005	0.020888
+CTN	717	717	358	0.000032	0.000027
+CTT	433538	620	256923	0.019481	0.019417
+GAA	288987	380	173143	0.012985	0.013086
+GAC	356447	445	211733	0.016017	0.016002
+GAG	297045	349	176707	0.013347	0.013355
+GAN	880	880	440	0.00004	0.000033
+GAT	442464	582	263312	0.019882	0.0199
+GCA	193977	338	116155	0.008716	0.008779
+GCC	329066	381	195302	0.014786	0.01476
+GCG	243539	212	144686	0.010943	0.010935
+GCN	691	691	345	0.000031	0.000026
+GCT	367588	465	218914	0.016517	0.016545
+GGA	306360	340	183393	0.013766	0.01386
+GGC	232356	238	138667	0.010441	0.01048
+GGG	315838	263	188159	0.014192	0.01422
+GGN	1144	1144	571	0.000051	0.000043
+GGT	436644	574	260022	0.01962	0.019652
+GNA	730	730	364	0.000033	0.000028
+GNC	979	979	489	0.000044	0.000037
+GNG	1008	1008	504	0.000045	0.000038
+GNT	2127	2127	1061	0.000096	0.00008
+GTA	340266	525	203156	0.01529	0.015354
+GTC	308144	370	182874	0.013846	0.013821
+GTG	388624	466	230606	0.017462	0.017428
+GTN	1002	1002	501	0.000045	0.000038
+GTT	676881	1307	401169	0.030415	0.030319
+NAA	958	958	479	0.000043	0.000036
+NAC	926	926	463	0.000042	0.000035
+NAG	778	778	388	0.000035	0.000029
+NAT	1714	1714	856	0.000077	0.000065
+NCA	826	826	413	0.000037	0.000031
+NCC	1533	1533	766	0.000069	0.000058
+NCG	1375	1375	687	0.000062	0.000052
+NCT	1750	1750	874	0.000079	0.000066
+NGA	922	922	461	0.000041	0.000035
+NGC	516	516	258	0.000023	0.000019
+NGG	1039	1039	518	0.000047	0.000039
+NGT	1344	1344	672	0.00006	0.000051
+NTA	2200	2200	1099	0.000099	0.000083
+NTC	1612	1612	805	0.000072	0.000061
+NTG	2732	2732	1364	0.000123	0.000103
+NTT	2618	2618	1308	0.000118	0.000099
+TAA	408839	604	244090	0.018371	0.018448
+TAC	320058	425	190667	0.014381	0.01441
+TAG	250988	428	149547	0.011278	0.011302
+TAN	858	858	428	0.000039	0.000032
+TAT	553535	1069	328280	0.024873	0.02481
+TCA	294971	435	175361	0.013254	0.013253
+TCC	401718	489	237415	0.018051	0.017943
+TCG	287826	415	171228	0.012933	0.012941
+TCN	708	708	354	0.000032	0.000027
+TCT	457175	546	270964	0.020543	0.020479
+TGA	553271	608	328484	0.024861	0.024826
+TGC	169812	205	100407	0.00763	0.007588
+TGG	288971	462	171696	0.012985	0.012976
+TGN	824	824	411	0.000037	0.000031
+TGT	486113	644	288073	0.021843	0.021772
+TNA	688	688	344	0.000031	0.000026
+TNC	516	516	258	0.000023	0.000019
+TNG	542	542	271	0.000024	0.00002
+TNT	861	861	430	0.000039	0.000032
+TTA	414674	984	248743	0.018633	0.018799
+TTC	273702	572	162261	0.012299	0.012263
+TTG	395176	952	234183	0.017757	0.017699
+TTN	760	760	379	0.000034	0.000029
+TTT	520525	1284	308796	0.023389	0.023338
diff --git a/data/modules/picard/HsMetrics/Sample1_cl_aln_srt_MD_IR_FX_BR__aln_srt_IR_FX-duplex_per_target_coverage.txt b/data/modules/picard/HsMetrics/Sample1_cl_aln_srt_MD_IR_FX_BR__aln_srt_IR_FX-duplex_per_target_coverage.txt
new file mode 100755
index 00000000..625344ee
--- /dev/null
+++ b/data/modules/picard/HsMetrics/Sample1_cl_aln_srt_MD_IR_FX_BR__aln_srt_IR_FX-duplex_per_target_coverage.txt
@@ -0,0 +1,1790 @@
+chrom	start	end	length	name	%gc	mean_coverage	normalized_coverage	min_normalized_coverage	max_normalized_coverage	min_coverage	max_coverage	pct_0x	read_count
+1	4849324	4849444	121	.	0.363636	88.570248	0.698413	0.536208	0.820083	68	104	0	155
+1	8080083	8080203	121	.	0.371901	34.090909	0.268821	0.212906	0.315417	27	40	0	73
+1	11168230	11168350	121	.	0.495868	88.958678	0.701476	0.512552	0.812198	65	103	0	159
+1	11169327	11169447	121	.	0.413223	73.719008	0.581305	0.402156	0.670261	51	85	0	125
+1	11174323	11174563	241	.	0.526971	131.767635	1.039043	0.686031	1.174927	87	149	0	360
+1	11177042	11177162	121	.	0.421488	77.173554	0.608546	0.425813	0.725458	54	92	0	135
+1	11181244	11181484	241	.	0.560166	135.481328	1.068327	0.709688	1.277438	90	162	0	362
+1	11181990	11182230	241	.	0.551867	154.423237	1.217692	0.583521	1.553427	74	197	0	412
+1	11184503	11184743	241	.	0.481328	146.883817	1.15824	0.764886	1.340521	97	170	0	399
+1	11186646	11186886	241	.	0.46473	141.352697	1.114625	0.693917	1.427261	88	181	0	395
+1	11187652	11187892	241	.	0.510373	152.26971	1.20071	0.717573	1.387834	91	176	0	426
+1	11188002	11188242	241	.	0.539419	135.850622	1.071239	0.615063	1.238011	78	157	0	381
+1	11189785	11189905	121	.	0.53719	86.702479	0.683685	0.473125	0.796427	60	101	0	144
+1	11190530	11190890	361	.	0.592798	167.526316	1.321015	0.662375	1.679594	84	213	0	627
+1	11210173	11210293	121	.	0.528926	96.661157	0.762214	0.512552	0.883167	65	112	0	158
+1	11217159	11217399	241	.	0.53527	142.497925	1.123656	0.65449	1.269552	83	161	0	383
+1	11227477	11227597	121	.	0.454545	85.61157	0.675083	0.488896	0.812198	62	103	0	153
+1	11293314	11293434	121	.	0.347107	67.454545	0.531907	0.362729	0.662375	46	84	0	116
+1	14192612	14192732	121	.	0.429752	98.85124	0.779483	0.615063	0.891052	78	113	0	166
+1	20541310	20541430	121	.	0.413223	103.867769	0.819041	0.56775	0.993563	72	126	0	186
+1	27022863	27024063	1201	.	0.766028	170.965029	1.348131	0.520438	1.8925	66	240	0	1928
+1	27056128	27056368	241	.	0.585062	174.240664	1.37396	0.851625	1.640167	108	208	0	463
+1	27057629	27058109	481	.	0.602911	152.243243	1.200502	0.709688	1.514	90	192	0	738
+1	27059165	27059285	121	.	0.520661	100.247934	0.790497	0.622948	0.898938	79	114	0	170
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diff --git a/data/modules/picard/QualityByCycleMetrics/mean_original_qual/Sample1_uncollapsed_FM_mean_quality_by_cycle.txt b/data/modules/picard/QualityByCycleMetrics/mean_original_qual/Sample1_uncollapsed_FM_mean_quality_by_cycle.txt
new file mode 100755
index 00000000..10e120b4
--- /dev/null
+++ b/data/modules/picard/QualityByCycleMetrics/mean_original_qual/Sample1_uncollapsed_FM_mean_quality_by_cycle.txt
@@ -0,0 +1,300 @@
+## htsjdk.samtools.metrics.StringHeader		
+# MeanQualityByCycle --CHART_OUTPUT Sample1_uncollapsed_FM_mean_quality_by_cycle.pdf --INPUT /var/lib/cwl/stg9a6368fe-9709-4de4-a257-3f1d3ccbc31e/Sample1_uncollapsed_FM.bam --OUTPUT C-4A5HWK-N019-d13_uncollapsed_FM_mean_quality_by_cycle.txt --TMP_DIR /tmp --REFERENCE_SEQUENCE /var/lib/cwl/stg4b7ba519-8180-4fbd-85e9-ef0a6f5fb948/hg19_virus.fasta --ALIGNED_READS_ONLY false --PF_READS_ONLY false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false		
+## htsjdk.samtools.metrics.StringHeader		
+# Started on: Sun Nov 10 00:44:46 GMT 2024		
+		
+		
+## HISTOGRAM	java.lang.Integer	
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\ No newline at end of file